Alternatives and similar repositories for do_x3dna

Users that are interested in do_x3dna are comparing it to the libraries listed below

• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆44Updated last year
• pstansfeld / MemProtMD
  ☆42Updated last month
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• mmtsb / toolset
  MMTSB Tool Set
  ☆31Updated last month
• cabb99 / open3spn2
  An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
  ☆18Updated last month
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆31Updated 5 years ago
• mirabdi / PDAnalysis
  ☆32Updated last year
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated last year
• cmbi / dssp
  The DSSP building software
  ☆44Updated last year
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆36Updated 3 weeks ago
• Pranavkhade / PACKMAN
  Python package built around protein structure and dynamics. OpenBabel-inspired objects.
  ☆36Updated last month
• KULL-Centre / FRETpredict
  Software for the prediction of FRET data from conformational ensembles.
  ☆23Updated 6 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆42Updated 2 years ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆32Updated 6 years ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆46Updated 3 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated 6 months ago
• GodzikLab / FATCAT-dist
  ☆15Updated 2 years ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆35Updated 2 years ago
• KULL-Centre / _2023_Tesei_IDRome
  ☆42Updated 2 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated 2 weeks ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆30Updated last year
• ELELAB / pyinteraph2
  development repository for PyInteraph2
  ☆22Updated 3 months ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆37Updated last year
• PDB-REDO / libcifpp
  Library containing code to manipulate mmCIF and PDB files
  ☆35Updated 2 weeks ago
• lcbc-epfl / metal-site-prediction
  ☆39Updated last year
• sbliven / rcsbsearch
  Python interface for the RCSB search API.
  ☆20Updated last year
• HITS-MBM / conan
  Analysis of contacts in molecular dynamics trajectories
  ☆42Updated 5 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last year
• kliment-olechnovic / voronota
  Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…
  ☆35Updated this week
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆53Updated 5 months ago