Alternatives and similar repositories for alphafold

Users that are interested in alphafold are comparing it to the libraries listed below

• RosettaCommons / RoseTTAFold
  This package contains deep learning models and related scripts for RoseTTAFold
  ☆2,148Updated last year
• aqlaboratory / openfold
  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
  ☆3,033Updated last month
• lucidrains / alphafold2
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  ☆1,607Updated 2 years ago
• facebookresearch / esm
  Evolutionary Scale Modeling (esm): Pretrained language models for proteins
  ☆3,658Updated last year
• google-deepmind / deepmind-research
  This repository contains implementations and illustrative code to accompany DeepMind publications
  ☆13,995Updated this week
• sokrypton / ColabFold
  Making Protein folding accessible to all!
  ☆2,276Updated last week
• RosettaCommons / RFdiffusion
  Code for running RFdiffusion
  ☆2,236Updated this week
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,212Updated 3 weeks ago
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,692Updated last week
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,629Updated last year
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,311Updated 10 months ago
• jax-ml / jax
  Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
  ☆32,578Updated this week
• google-deepmind / alphafold3
  AlphaFold 3 inference pipeline.
  ☆6,617Updated last week
• karpathy / minGPT
  A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training
  ☆22,108Updated 10 months ago
• google-deepmind / alphatensor
  ☆2,758Updated last year
• google-deepmind / dm-haiku
  JAX-based neural network library
  ☆3,047Updated this week
• Ligo-Biosciences / AlphaFold3
  Open source implementation of AlphaFold3
  ☆986Updated 8 months ago
• schrodinger / pymol-open-source
  Open-source foundation of the user-sponsored PyMOL molecular visualization system.
  ☆1,384Updated 2 weeks ago
• a-r-j / graphein
  Protein Graph Library
  ☆1,105Updated this week
• kyegomez / AlphaFold3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆787Updated 3 weeks ago
• evolutionaryscale / esm
  ☆1,965Updated 3 weeks ago
• aqlaboratory / proteinnet
  Standardized data set for machine learning of protein structure
  ☆894Updated 4 years ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,264Updated last month
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆1,189Updated this week
• arogozhnikov / einops
  Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)
  ☆8,991Updated last month
• dellacortelab / prospr
  ProSPr: Protein Structure Prediction
  ☆420Updated 2 years ago
• DeepGraphLearning / torchdrug
  A powerful and flexible machine learning platform for drug discovery
  ☆1,505Updated 10 months ago
• google-research / google-research
  Google Research
  ☆35,790Updated this week
• kornia / kornia
  🐍 Geometric Computer Vision Library for Spatial AI
  ☆10,537Updated last week
• lucidrains / alphafold3-pytorch
  Implementation of Alphafold 3 from Google Deepmind in Pytorch
  ☆1,460Updated 4 months ago