Alternatives and similar repositories for cookbook

Users that are interested in cookbook are comparing it to the libraries listed below

• imagej / imagej-scripting
  ImageJ-specific applications of the SciJava script languages
  ☆27Updated 6 months ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last month
• imjoy-team / imjoy-jupyter-extension
  Running ImJoy plugins in Jupyter notebooks
  ☆11Updated 2 years ago
• fiji / microscope-image-quality
  TensorFlow-based classifier for microscope image focus quality.
  ☆18Updated 2 years ago
• HenriquesLab / NanoJ-Core
  Core functionality of NanoJ
  ☆16Updated last year
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 9 months ago
• Jhsmit / PymageJ
  Python tools for ImageJ
  ☆13Updated 3 years ago
• clij / clij
  CLIJ is deprecated. Visit CLIJ2
  ☆56Updated 3 years ago
• sverger / SurfCut
  Fiji macro for cutting confocal stacks at various depths relative to surface signal
  ☆10Updated 4 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• mehta-lab / reconstruct-order
  Label-free measurement of density and anisotropy from polarization-resolved images
  ☆12Updated 2 years ago
• imjoy-team / kaibu
  Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.
  ☆34Updated 2 months ago
• grishkam / QuickFigures
  QuickFigures is a toolset for creating scientific figures see publication for details
  ☆36Updated last year
• InsightSoftwareConsortium / ITKMontage
  Montaging for microscopy imaging files
  ☆30Updated 2 months ago
• ClearVolume / PyClearVolume
  python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.
  ☆15Updated 8 years ago
• bigdataprocessor / bigdataprocessor2
  ☆20Updated 4 months ago
• Biomedical-Imaging-Group / OrientationJ
  ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection
  ☆25Updated 7 months ago
• imglib / imglyb
  Connecting Java/ImgLib2 + Python/NumPy
  ☆30Updated last month
• biocompibens / SME
  Smooth 2D manifold extraction from 3D image stack
  ☆21Updated 7 years ago
• yapic / yapic
  Yet Another Pixel Classifier (based on deep learning)
  ☆35Updated 11 months ago
• CSBDeep / CSBDeep_website
  ☆40Updated 5 years ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆64Updated this week
• haesleinhuepf / napari-plot-profile
  ☆18Updated last month
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆96Updated this week
• imagej / imagej-tensorflow
  ImageJ/TensorFlow integration library
  ☆26Updated 2 weeks ago
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 5 years ago
• clEsperanto / i2k2020_tutorial_clij_clesperanto
  ☆12Updated 4 years ago
• matplotlib / napari-matplotlib
  Linking napari layers with Matplotlib plots
  ☆40Updated 3 weeks ago
• UU-cellbiology / ComDet
  ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
  ☆17Updated 2 years ago