Health-Informatics-UoN / carrot-mapperLinks
Streamlined Data Mapping to OMOP
☆19Updated last week
Alternatives and similar repositories for carrot-mapper
Users that are interested in carrot-mapper are comparing it to the libraries listed below
Sorting:
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- An ETL pipeline to transform your EMP data to OMOP.☆14Updated last month
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- ETL Tool for converting datasets to OMOP CDM☆34Updated 3 years ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 3 months ago
- CDM Builder leveraging AWS Lambda☆18Updated this week
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆54Updated this week
- A package supporting the conversion from Synthea CSV to OMOP CDM☆119Updated 9 months ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆86Updated 7 months ago
- Oncology Working Group Repository☆58Updated 2 months ago
- [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM☆34Updated last month
- A rules-based transformation engine that allows exporting data in REDCap as FHIR resources.☆12Updated 2 years ago
- Course materials for OHDSI ETL tutorial☆53Updated 2 months ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- A tool to help improve data quality standards in observational data science.☆167Updated last month
- Leaf Clinical Data Explorer☆97Updated last month
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- ☆14Updated 2 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆87Updated 3 weeks ago
- ☆17Updated 7 years ago
- A modern, lightweight medication sig parser.☆12Updated 10 months ago
- FHIR Ontop OMOP Implementation☆20Updated last year
- Conversion from FHIR HL7 to OMOP CDM☆19Updated 10 months ago
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆14Updated 4 years ago
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆101Updated 3 years ago
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆104Updated last year
- eds-scikit is a Python library providing tools to process and analyse OMOP data☆43Updated 11 months ago
- Data Ingestion and Harmonization☆46Updated 2 months ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆71Updated 3 months ago