nyukat / pathology_extraction
Improving Information Extraction from Pathology Reports using Named Entity Recognition
☆13Updated last year
Alternatives and similar repositories for pathology_extraction:
Users that are interested in pathology_extraction are comparing it to the libraries listed below
- TCGA Pathology Reports in Machine Readable Text☆35Updated 7 months ago
- ☆57Updated 8 months ago
- ☆15Updated 2 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆75Updated 4 years ago
- Train a model to predict gene expression from histology slides.☆94Updated 2 years ago
- Scripts for data processing☆40Updated 7 months ago
- ☆18Updated last year
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆70Updated 2 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆54Updated last year
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆33Updated last month
- MASI Lab Implementation of PheWAS in Python☆28Updated 2 months ago
- A vision language model for gigapixel whole slide images in histopathology☆30Updated 3 months ago
- Data and code to accompany our Nature publication☆44Updated 2 years ago
- Code from Foersch et al. (Under Construction / Development)☆36Updated last year
- ☆26Updated 2 years ago
- Deep learning-based multimodal integration of histology and genomics to improves cancer origin prediction☆23Updated last year
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆21Updated 2 years ago
- Tools to build deep learning pipelines.☆90Updated 2 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated 9 months ago
- Multi-task deep learning framework for multi-omics data analysis☆40Updated 2 years ago
- Deep Learning with Multimodal Representation for Pancancer Prognosis Prediction☆82Updated 5 years ago
- ☆30Updated 3 years ago
- ☆46Updated 2 years ago
- HCC_Deep_learning☆19Updated 4 years ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆66Updated 4 months ago
- ☆47Updated 7 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆50Updated 2 months ago
- ☆83Updated 8 months ago
- ☆46Updated 2 weeks ago
- First commit☆59Updated 2 years ago