Jupyter notebook templates for processing and analyzing neuroscience data.
☆17Jun 2, 2026Updated 4 months ago
Alternatives and similar repositories for neuro-notebook-templates
Users that are interested in neuro-notebook-templates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A codebase for tracking laboratory mice in videos☆14Sep 2, 2025Updated last year
- SING: SDE Inference via Natural Gradients☆42May 5, 2026Updated 5 months ago
- IBL AI Agent helps you use a coding agent such as OpenAI Codex to analyze International Brain Laboratory (IBL) data.☆53Updated this week
- Code package that allows meta analyses of unsupervised behavior results☆22Jun 5, 2025Updated last year
- Richard @rdgao & Michael @michaeldeistler: using neural network-based regression and density estimation for Generalized Bayesian Inferenc…☆11Dec 19, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A flexible pipeline for analyzing zebrafish locomotion☆13May 28, 2025Updated last year
- This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markov…☆11Sep 25, 2025Updated last year
- Modeling animal vocalizations with variational autoencoders☆27Mar 2, 2024Updated 2 years ago
- DeePhys was created to facilitate the analysis of extracellular recordings of neuronal cultures using high-density microelectrode arrays …☆15Oct 8, 2026Updated last week
- Region Of Interest Classification and Tracking☆42Updated this week
- Behavior Classifier Component from the Jax Animal Behavior System☆28Updated this week
- A Lightning app for animal pose estimation.☆25Jan 15, 2026Updated 9 months ago
- A mouse brain histology tool for neuroscientists.☆13Feb 16, 2026Updated 8 months ago
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Feeding Experimentation Device version 3☆36Mar 25, 2026Updated 6 months ago
- MEA-ToolBox is a standalone application that allows users to analyze voltage data recorded from multielectrode arrays.☆21Nov 9, 2022Updated 3 years ago
- Emergent property inference.☆11Jul 6, 2023Updated 3 years ago
- UltraMegaSort2000 - Spike sorting and quality metrics for extracellular spike data☆13Aug 20, 2014Updated 12 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆44Updated this week
- Motion Tracking☆13Jan 12, 2023Updated 3 years ago
- A program for viewing and analyzing electrophysiological data☆62Updated this week
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆16Aug 25, 2026Updated last month
- Automated polysomnography for experimental animal research☆18Jan 5, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository for ICE1011, an undergraduate and graduate course on signal analysis for neuroscience☆17Oct 19, 2021Updated 4 years ago
- ☆48Jul 2, 2025Updated last year
- SimpylCellCounter - An Automated Solution for Quantifying Cells in Brain Tissue☆17Dec 5, 2022Updated 3 years ago
- Closed-loop feedback optogenetic system☆10Apr 5, 2022Updated 4 years ago
- Code for Functional Mixed Models for Fiber Photometry☆19Jul 30, 2025Updated last year
- Extracting neuronal functional network dynamics via adaptive Granger causality analysis☆19Mar 29, 2018Updated 8 years ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆14Feb 7, 2024Updated 2 years ago
- A web platform for analyzing neuroimaging data.☆14Oct 17, 2023Updated 3 years ago
- Zenith of Event-based Time-locked Anomalies☆15Feb 26, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.☆82May 15, 2026Updated 5 months ago
- Repository of jupyter notebooks for Psyc63 Experimental Study of Behavior at Dartmouth College☆13Mar 27, 2019Updated 7 years ago
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆41Aug 3, 2026Updated 2 months ago
- Structure Index code repository☆19Jun 13, 2025Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆78Jun 11, 2025Updated last year
- Calcium imaging inter-session alignment☆19Updated this week
- Conditional Linear Dynamical Systems☆17Oct 7, 2025Updated last year