bio-ontology-research-group / SMUDGELinks
SmuDGE: Semantic Disease Gene Embeddings
☆12Updated 7 years ago
Alternatives and similar repositories for SMUDGE
Users that are interested in SMUDGE are comparing it to the libraries listed below
Sorting:
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- Method for drug repurposing from knowledge graphs and literature☆36Updated 5 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆101Updated 4 months ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 8 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Heterogeneous disease-gene-related☆19Updated 4 years ago
- OhmNet: Representation learning in multi-layer graphs☆84Updated 5 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Disease pathways in the human interactome☆23Updated 7 years ago
- ☆36Updated 8 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆29Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- ☆73Updated 2 years ago
- ☆65Updated 6 years ago
- ☆58Updated 5 years ago
- all-paths graph kernel for protein-protein interaction extraction☆12Updated 11 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 6 years ago
- Drug-target interaction prediction using deepWalk node embedding algorithm on drugBank☆11Updated 5 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 5 years ago
- ☆57Updated 6 years ago
- ☆20Updated 5 years ago
- Predicting adverse drug reactions from a knowledge graph☆29Updated 4 years ago
- development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBank☆14Updated 8 years ago
- A deep learning framework for predicting lncRNA–disease associations☆10Updated 5 years ago
- Open Targets Library ETL Pipeline | Apache Beam☆16Updated 4 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆43Updated 4 years ago
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆14Updated 5 years ago
- ☆43Updated 5 years ago
- ☆34Updated 5 years ago