bio-ontology-research-group / SMUDGE
SmuDGE: Semantic Disease Gene Embeddings
☆12Updated 6 years ago
Alternatives and similar repositories for SMUDGE:
Users that are interested in SMUDGE are comparing it to the libraries listed below
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Method for drug repurposing from knowledge graphs and literature☆34Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- ☆55Updated 4 years ago
- Heterogeneous disease-gene-related☆18Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 7 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 8 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆94Updated last year
- Predicting adverse drug reactions from a knowledge graph☆28Updated 4 years ago
- ☆19Updated 4 years ago
- ☆66Updated last year
- ☆11Updated 5 years ago
- A Standard Database for Drug Repositioning☆18Updated 7 years ago
- Python script for processing DrugBank XML to MySQL-ready CSV files☆16Updated 8 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- ☆41Updated 5 years ago
- Disease pathways in the human interactome☆23Updated 7 years ago
- Processing SIDER 4.1: the side effect resource☆21Updated 9 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated 8 months ago
- ☆54Updated 5 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 3 years ago
- NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions☆76Updated 3 years ago
- Drug-target interaction prediction using deepWalk node embedding algorithm on drugBank☆11Updated 4 years ago
- Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.☆32Updated last year
- Open Targets Library ETL Pipeline | Apache Beam☆16Updated 3 years ago
- ☆63Updated 5 years ago
- ☆16Updated 3 years ago