bio-ontology-research-group / SMUDGELinks
SmuDGE: Semantic Disease Gene Embeddings
☆12Updated 7 years ago
Alternatives and similar repositories for SMUDGE
Users that are interested in SMUDGE are comparing it to the libraries listed below
Sorting:
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- Method for drug repurposing from knowledge graphs and literature☆36Updated 5 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 8 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆99Updated 4 months ago
- OhmNet: Representation learning in multi-layer graphs☆84Updated 5 years ago
- Heterogeneous disease-gene-related☆19Updated 4 years ago
- Disease pathways in the human interactome☆23Updated 7 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 6 years ago
- ☆65Updated 6 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Updated 3 years ago
- all-paths graph kernel for protein-protein interaction extraction☆12Updated 11 years ago
- Python script for processing DrugBank XML to MySQL-ready CSV files☆19Updated 8 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 7 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆29Updated 3 years ago
- ☆34Updated 5 years ago
- Processing SIDER 4.1: the side effect resource☆23Updated 9 years ago
- ☆20Updated 5 years ago
- ☆37Updated 8 years ago
- ☆58Updated 5 years ago
- migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactions☆38Updated 8 years ago
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆65Updated 5 years ago
- code for paper "Attributed Network Embedding via Subspace Discovery"☆21Updated 6 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 9 years ago
- ☆72Updated 2 years ago
- Drug-target interaction prediction using deepWalk node embedding algorithm on drugBank☆11Updated 5 years ago
- Open Targets Library ETL Pipeline | Apache Beam☆16Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 5 years ago