Finding the pitfalls of deep learning predictors of interacting residues in antibodies π¦
β25Sep 8, 2025Updated 11 months ago
Alternatives and similar repositories for topefind-public
Users that are interested in topefind-public are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inpainting protein sequence and structureβ12Nov 10, 2023Updated 2 years ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property predictionβ14Apr 23, 2024Updated 2 years ago
- Class to view Alphafold modelsβ11Jan 20, 2023Updated 3 years ago
- [IEEE TMM 2023] This is the official repo of the paper "Perceptual Quality Improvement in Videoconferencing using Keyframes-based GAN".β17Dec 10, 2024Updated last year
- Tools for annotation, processing and ML for antibody sequencesβ44Updated this week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assessing the impact of mutations on antibody-antigen binding affinityβ18Dec 7, 2020Updated 5 years ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"β16Oct 17, 2024Updated last year
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Modelβ16Jun 4, 2024Updated 2 years ago
- Active learning workflow to train and fine-tune molecular property predictors with chemist feedback for goal-oriented molecule generationβ¦β15Apr 25, 2025Updated last year
- All in one Structure-Based Virtual Screening workflow based on the concept of consensus docking.β58Jul 5, 2026Updated last month
- β18Sep 16, 2024Updated last year
- β12Feb 23, 2025Updated last year
- An antibody-specific language model focusing on NGL predictionβ43Aug 22, 2024Updated last year
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"β12Jul 18, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- β42Aug 1, 2025Updated last year
- Download recorded lessons from unifi webex platform passing by the Moodle platform.β16Sep 23, 2023Updated 2 years ago
- β142Aug 8, 2024Updated 2 years ago
- Open source library to work with molecular systemsβ14Updated this week
- In MT-BERT we reproduce a neural language understanding model which implements a Multi-Task Deep Neural Network (MT-DNN) for learning reβ¦β22Dec 2, 2021Updated 4 years ago
- β11May 22, 2024Updated 2 years ago
- dockECR: open consensus docking and ranking protocol for virtual screening of small moleculesβ28Oct 15, 2021Updated 4 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.β38Nov 7, 2024Updated last year
- β21Nov 21, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multiple sequence alignment browserβ11Dec 12, 2022Updated 3 years ago
- β13Mar 28, 2025Updated last year
- The Polaris datasets and benchmarks recipesβ15May 26, 2025Updated last year
- β58Dec 15, 2025Updated 7 months ago
- Target predictionβ14May 8, 2020Updated 6 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific regionβ13May 21, 2024Updated 2 years ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learningβ11Jul 6, 2023Updated 3 years ago
- random colab notebooks for biologyβ26Aug 23, 2025Updated 11 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinityβ13Jul 9, 2025Updated last year
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.β14Aug 3, 2026Updated last week
- β17Jul 7, 2024Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodiesβ23Jul 9, 2024Updated 2 years ago
- Antibody-specific masked language modelβ79Mar 5, 2026Updated 5 months ago
- β10Apr 1, 2024Updated 2 years ago
- Sapiens is a human antibody language model based on BERT.β79Jan 22, 2026Updated 6 months ago
- A Python framework for the rapid modeling of glycansβ19Jun 19, 2026Updated last month