uibcdf / molsysmtLinks
Open source library to work with molecular systems
☆13Updated last week
Alternatives and similar repositories for molsysmt
Users that are interested in molsysmt are comparing it to the libraries listed below
Sorting:
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆45Updated 11 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- Package for consistent reporting of relative free energy results☆39Updated last month
- Automated tools for submitting molecules to QCFractal☆27Updated 3 weeks ago
- A collections of scripts for working molecular dynamics simulations☆44Updated last week
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated 2 weeks ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated last week
- DENOPTIM is a software package for de novo design and virtual screening of functional molecules of any kind.☆37Updated 2 months ago
- Physical validation of molecular simulations☆56Updated last month
- User Guide for MDAnalysis☆28Updated this week
- Fragment molecules for quantum mechanics torsion scans☆45Updated 3 weeks ago
- Lee-Ping's general purpose script for running OpenMM molecular dynamics simulations☆28Updated last year
- Given an RDKit molecule that does not sanitise, correct it until it does☆41Updated last year
- Advanced toolkit for binding free energy calculations☆33Updated last month
- Notebooks demonstrating how to do simple tasks related to free energy calculations.☆46Updated last week
- A comprehensive toolkit for predicting free energies☆55Updated 7 months ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆35Updated 3 weeks ago
- A collection of cheminformatics scripts that use rdkit☆66Updated 3 years ago
- ☆29Updated last week
- Set up relative free energy calculations using a common scaffold☆24Updated 3 months ago
- Real time monitoring and visualization of Amber MD simulations☆15Updated 5 years ago
- Compare optimized geometries and energies from various force fields with respect to a QM reference.☆13Updated 4 years ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- In-house tools for setting up arbitrary solute-solvent mixtures for simulation in GROMACS, Amber, OpenMM or other codes☆32Updated 4 years ago
- Sire Molecular Simulations Framework☆59Updated this week
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 3 years ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆33Updated last month
- An automated framework for generating optimized partial charges for molecules☆38Updated last week