Alternatives and similar repositories for PFMBench

Users that are interested in PFMBench are comparing it to the libraries listed below

• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆114Updated 2 months ago
• zhanghaicang / carbonmatrix_public
  ☆119Updated 6 months ago
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆114Updated 4 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆67Updated 3 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆166Updated 3 weeks ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆122Updated 9 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆67Updated 4 months ago
• levinthal / Pallatom
  ☆131Updated 6 months ago
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆143Updated 6 months ago
• Gonglab-THU / SPIRED-Fitness
  ☆46Updated 6 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆78Updated 3 months ago
• zhengkangjie / ESM-AA
  ☆76Updated 10 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆174Updated last year
• bytedance / PXDesignBench
  A Unified Evaluation Suite for Protein Design
  ☆113Updated last week
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆71Updated 4 months ago
• alexechu / protpardelle
  ☆65Updated 2 years ago
• IntelliGen-AI / IntelliFold
  IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.
  ☆156Updated 5 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆84Updated 10 months ago
• bytedance / apm
  ☆53Updated 6 months ago
• KatarinaYuan / StructTokenBench
  A benchmark for comprehensive evaluation on protein structure tokenization methods
  ☆37Updated 4 months ago
• A4Bio / FoldToken_open
  ☆23Updated last year
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆102Updated last month
• wengong-jin / DSMBind
  ☆96Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated last month
• luwei0917 / BindingGYM
  ☆36Updated 4 months ago
• BytedProtein / ByProt
  ☆208Updated last year
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆93Updated 5 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆73Updated 4 years ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆129Updated 9 months ago