☆44Aug 1, 2025Updated last year
Alternatives and similar repositories for PFMBench
Users that are interested in PFMBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Nov 6, 2024Updated last year
- Official implementation of From Supervision to Exploration: What Does Protein Language Model Learn During Reinforcement Learning?☆15Jun 19, 2026Updated 2 months ago
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆25Apr 10, 2026Updated 4 months ago
- ☆40Sep 17, 2024Updated last year
- Size-Wise Analysis of Transfer Learning of pLM Embeddings☆13Jun 10, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- ☆29May 26, 2026Updated 3 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆160Jul 20, 2026Updated last month
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆25May 3, 2025Updated last year
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆204Sep 18, 2024Updated last year
- Code base for "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"☆15Jun 19, 2025Updated last year
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆309Sep 23, 2025Updated 11 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆626Mar 8, 2026Updated 5 months ago
- ☆76Sep 25, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆24Jan 16, 2026Updated 7 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆56Nov 14, 2023Updated 2 years ago
- Modelling protein conformations with Alphafold3☆16Jun 11, 2026Updated 2 months ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆48Jun 17, 2025Updated last year
- ☆89Sep 20, 2023Updated 2 years ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆55Aug 2, 2025Updated last year
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆84May 27, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code for 'On Pre-trained Language Models For Antibody'☆31Feb 1, 2023Updated 3 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆53Dec 3, 2024Updated last year
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆228Jun 23, 2026Updated 2 months ago
- Geometric Byte Pair Encoding of Protein Structure (ICLR 2026)☆33Mar 29, 2026Updated 5 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠☆25Sep 8, 2025Updated 11 months ago
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆102Oct 16, 2025Updated 10 months ago
- ☆16Mar 19, 2026Updated 5 months ago
- ☆23Aug 14, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The Family of Diffusion Protein Language Models (DPLM)☆343Jul 25, 2025Updated last year
- Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…☆32Aug 6, 2025Updated last year
- A generalized computational framework for biomolecular modeling.☆443Aug 20, 2026Updated last week
- ☆2,930Updated this week
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆111Jan 11, 2025Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated last month
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆272Jul 24, 2025Updated last year