This is a python script that allows for batch processing of AlphaFold3 output files
☆18Oct 13, 2024Updated last year
Alternatives and similar repositories for Process-AlphaFold3-outputs
Users that are interested in Process-AlphaFold3-outputs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Feb 4, 2025Updated last year
- ☆55Mar 12, 2026Updated 2 weeks ago
- Prediction of Antibody CDR and protein loop flexibility☆17Sep 17, 2025Updated 6 months ago
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆19May 20, 2024Updated last year
- scripts to visualise results of alphafold2 and 3 multimer runs☆18May 28, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆23Aug 19, 2025Updated 7 months ago
- Physico-chemical and biological property prediction for small molecules☆12May 3, 2022Updated 3 years ago
- AFusion: AlphaFold 3 GUI & Toolkit with Visualization☆169Sep 21, 2025Updated 6 months ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Aug 28, 2025Updated 6 months ago
- A novel approach to the classification of antimicrobial peptides (AMPs) using pre-trained language models to create contextual vectorized…☆17Sep 10, 2024Updated last year
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆13Mar 21, 2024Updated 2 years ago
- CryoBoltz code for protein structure prediction with cryo-EM guidance. NeurIPS 2025.☆27Nov 30, 2025Updated 3 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆65Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A script designed to track the detailed submission status on ACS Publishing Platform.☆25Jul 10, 2025Updated 8 months ago
- ☆16Jul 28, 2022Updated 3 years ago
- Materials for 0.5-day MDAnalysis workshops☆14Jul 25, 2025Updated 8 months ago
- our in-house version of ProteinMPNN☆33Feb 12, 2026Updated last month
- Official implementation of "A unified pre-trained deep learning framework for cross-task reaction performance prediction and synthesis pl…☆37Jan 7, 2026Updated 2 months ago
- Screening protocol with AUTODOCK-GPU☆14Feb 27, 2023Updated 3 years ago
- ☆33Jun 1, 2024Updated last year
- Resources for the BioML Challenge 2024: Bits to Binders☆19Aug 24, 2024Updated last year
- A MolProbity-style visualization plugin for PyMOL☆16Jul 26, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scripts to add mmseqs MSA/templates to alphafold3 input json and also custom template files☆19Dec 4, 2024Updated last year
- ☆32Mar 14, 2026Updated last week
- A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.☆41Jul 17, 2025Updated 8 months ago
- [Neurips 2025] Official Implementation of ConfRover models☆22Feb 3, 2026Updated last month
- improved Wasserstein GAN keras☆12Apr 20, 2017Updated 8 years ago
- Frankies Scalable, AI-Based Antibody Design Pipeline☆18Feb 20, 2026Updated last month
- Help to connect to the network in CPU, and othe schools in similar situation can modify the code to get it work☆12Mar 11, 2026Updated 2 weeks ago
- Recovering latent vectors from Generative Adversarial Networks☆17Jun 24, 2017Updated 8 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Example code for Weight Normalization, from "Weight Normalization: A Simple Reparameterization to Accelerate Training of Deep Neural Netw…☆18Feb 27, 2020Updated 6 years ago
- Homomer symmetry prediction from protein sequence☆43Mar 13, 2025Updated last year
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- An intelligent command line interface for ChimeraX☆22Mar 5, 2026Updated 3 weeks ago
- Personal branch of chemprop used to predict the antibiotics Abaucin☆29May 25, 2023Updated 2 years ago
- 基于QQ/微信聊天记录的年度报告，支持群聊，单聊。简单安装客户端，就可以方便生成属于自己的、每个群聊的年度报告。☆26Feb 9, 2022Updated 4 years ago
- ☆21Oct 26, 2024Updated last year