amorehead / awesome-generative-flowsLinks
Awesome papers related to generative flow matching and its applications in bioinformatics.
☆33Updated last week
Alternatives and similar repositories for awesome-generative-flows
Users that are interested in awesome-generative-flows are comparing it to the libraries listed below
Sorting:
- ☆55Updated 6 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Updated 11 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆103Updated 2 years ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆92Updated 3 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆101Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆125Updated 11 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Updated last week
- In-silico design pipeline for evaluating protein structure diffusion models.☆29Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆73Updated 2 weeks ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆234Updated 6 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆102Updated 8 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆53Updated 5 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Updated last year
- ☆78Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆89Updated 2 years ago
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆59Updated 3 weeks ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆57Updated last month
- Official implementation of "Learning the language of protein structures"☆41Updated 7 months ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆61Updated last year
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Updated last year
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆69Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆36Updated 2 years ago
- Official repository of EnzymeFlow☆98Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 8 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆181Updated 2 years ago