alistairewj / bert-deid
deidentify patient notes using pre-trained BERT
☆14Updated 4 years ago
Alternatives and similar repositories for bert-deid:
Users that are interested in bert-deid are comparing it to the libraries listed below
- My heuristic script for sentence tokenization of mimic notes☆8Updated 7 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated 2 years ago
- GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.☆16Updated last year
- ☆22Updated 2 years ago
- ☆29Updated 3 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆30Updated 11 months ago
- ☆59Updated last year
- Transformers for Clinical NLP☆24Updated 2 months ago
- Robust de-identification of medical notes using transformer architectures☆52Updated 2 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 5 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Dataset for training machine learning model for automatically generating psychiatric case notes from doctor-patient conversations.☆57Updated 2 years ago
- Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts …☆26Updated 7 years ago
- Clinical text summarization by adapting large language models☆137Updated 8 months ago
- ☆24Updated 2 months ago
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆18Updated last year
- Python library for exploring, cleaning, normalizing, and augmenting large datasets of radiological data.☆24Updated 2 years ago
- Masking identifiable information from health related documents.☆19Updated 2 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆60Updated 2 years ago
- Implements ChatGPT API via request package.☆45Updated last year
- Notebook for BERT medical named entity recognition☆40Updated 2 years ago
- Recognize bio-medical entities from a text corpus☆120Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated last week
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- This project develops compact transformer models tailored for clinical text analysis, balancing efficiency and performance for healthcare…☆18Updated last year
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆84Updated 9 months ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆38Updated 2 months ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- ☆98Updated 3 years ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆27Updated last year