Alternatives and similar repositories for Pisces

Users that are interested in Pisces are comparing it to the libraries listed below

• zjunlp / OntoProtein
  [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
  ☆149Updated 6 months ago
• QizhiPei / BioT5
  BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)
  ☆117Updated last year
• QizhiPei / SSM-DTA
  SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction (Briefings in Bioinformatics 2023)
  ☆53Updated last year
• linjc16 / R2-DDI
  [BIB 2023] Official implementation of "R2-DDI: Relation-aware Feature Refinement for Drug-drug Interaction Prediction".
  ☆13Updated last year
• dual-view-molecule-pretraining / dmp
  ☆11Updated 4 years ago
• KyGao / ABGNN
  PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
  ☆53Updated last year
• blender-nlp / MolT5
  Associated Repository for "Translation between Molecules and Natural Language"
  ☆183Updated 2 years ago
• GT4SD / multitask_text_and_chemistry_t5
  Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023
  ☆42Updated last year
• ProtLLM / ProtLLM
  [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training
  ☆49Updated last year
• HICAI-ZJU / KANO
  Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".
  ☆129Updated last year
• phenixace / MolReGPT
  ☆51Updated last year
• zjunlp / NLP4SciencePapers
  Must-read papers on NLP for science.
  ☆58Updated 2 years ago
• HICAI-ZJU / InstructBioMol
  Code for InstructBioMol, implementing the Nature Machine Intelligence paper "Advancing Biomolecular Understanding and Design Following Hu…
  ☆19Updated last month
• mmcdermott / structure_inducing_pre-training
  ☆16Updated 3 years ago
• cnedwards / text2mol
  Repository for Text2Mol: Cross-Modal Molecular Retrieval with Natural Language Queries
  ☆46Updated 6 months ago
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆98Updated last year
• syr-cn / ReLM
  [EMNLP 2023] ReLM: Leveraging Language Models for Enhanced Chemical Reaction Prediction.
  ☆22Updated last year
• hwwang55 / MolR
  Chemical-Reaction-Aware Molecule Representation Learning
  ☆80Updated 3 years ago
• QizhiPei / Awesome-Biomolecule-Language-Cross-Modeling
  Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…
  ☆223Updated 5 months ago
• stardj / PharmHGT
  Repo of pharmacophoric constrained heterogeneous-graph-transformer
  ☆17Updated 2 years ago
• yuanweining / FusionDTA
  ☆21Updated last year
• lihan97 / KPGT
  codes for KPGT (Knowledge-guided Pre-training of Graph Transformer)
  ☆117Updated last year
• zjunlp / MolGen
  [ICLR 2024] Domain-Agnostic Molecular Generation with Chemical Feedback
  ☆176Updated 9 months ago
• gersteinlab / GenAI4Drug
  [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design
  ☆89Updated 9 months ago
• enai4bio / BridgeDPI
  BridgeDPI: A Novel Graph Neural Network for Predicting Drug-Protein Interactions
  ☆20Updated 8 months ago
• teslacool / UnifiedMolPretrain
  Unified 2D and 3D Pre-Training of Molecular Representations
  ☆30Updated 3 years ago
• ChnQ / LLM4Mol
  Code implementation for paper "Can Large Language Models Empower Molecular Property Prediction?"
  ☆39Updated 2 years ago
• Fangyinfff / KCL
  Code and Data for the paper: Molecular Contrastive Learning with Chemical Element Knowledge Graph [AAAI 2022]
  ☆90Updated last year
• AI-HPC-Research-Team / GIT-Mol
  A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text
  ☆33Updated 3 months ago
• O-GNN / O-GNN
  ☆14Updated 2 years ago