Alternatives and similar repositories for AlphaDesign

Users that are interested in AlphaDesign are comparing it to the libraries listed below

• smiles724 / ProtMD
  ☆63Updated 5 months ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆87Updated 6 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆96Updated 10 months ago
• JocelynSong / SurfPro
  ☆33Updated 8 months ago
• KyGao / ABGNN
  PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
  ☆53Updated 2 years ago
• biomap-research / xTrimoPGLM
  The first 100B protein language model from biomap
  ☆17Updated 8 months ago
• zhengkangjie / ESM-AA
  ☆76Updated 9 months ago
• HICAI-ZJU / PromptProtein
  Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]
  ☆33Updated 2 years ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆121Updated 9 months ago
• GenSI-THUAIR / MolCRAFT
  Official repository for MolCRAFT series
  ☆131Updated last month
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆111Updated 2 years ago
• QizhiPei / FABind
  FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
  ☆134Updated 4 months ago
• peizhenbai / MapDiff
  Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch
  ☆41Updated 4 months ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆101Updated last week
• IntelliGen-AI / IntelliFold
  IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.
  ☆155Updated 4 months ago
• allanchen95 / ESMPair
  Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models
  ☆15Updated last year
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆141Updated 6 months ago
• MattMcPartlon / AttnPacker
  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
  ☆90Updated last year
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆99Updated 2 years ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆88Updated 4 months ago
• KyGao / awesome-docking
  An awesome & curated list of docking papers
  ☆118Updated 8 months ago
• zaixizhang / FLAG
  Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"
  ☆70Updated last year
• Supercomputing-System-AI-Lab / MegaFold
  ☆58Updated 4 months ago
• mingchen-li / ProteinPretraining
  Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.
  ☆33Updated 6 months ago
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆118Updated this week
• jiaxianyan / BioMiner
  A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature
  ☆61Updated 4 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated last year
• jkwang93 / Token-Mol
  Token-Mol 1.0：tokenized drug design with large language model
  ☆57Updated last month
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆39Updated 5 months ago