A4Bio / GraphsGPTLinks
The official implementation of the ICML'24 paper "A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer".
☆45Updated 6 months ago
Alternatives and similar repositories for GraphsGPT
Users that are interested in GraphsGPT are comparing it to the libraries listed below
Sorting:
- InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery (COLING 2025)☆50Updated 10 months ago
- This is an official implementation for "GRIT: Graph Inductive Biases in Transformers without Message Passing".☆128Updated last month
- [ICLR 2024] VQGraph: Rethinking Graph Representation Space for Bridging GNNs and MLPs☆102Updated last year
- The code for GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learning☆62Updated last year
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆74Updated last year
- Edge-Augmented Graph Transformer☆80Updated last year
- [IJCAI 2023] Graph Propagation Transformer for Graph Representation Learning☆50Updated last year
- Official Code Repository for the paper "Graph Generation with Diffusion Mixture" (ICML 2024).☆34Updated last year
- ☆48Updated last year
- [NeurIPS'23] Graph Mixture of Experts: Learning on Large-Scale Graphs with Explicit Diversity Modeling. Haotao Wang, Ziyu Jiang, Yuning Y…☆54Updated last year
- Code implementation for paper "Can Large Language Models Empower Molecular Property Prediction?"☆39Updated 2 years ago
- Code for IJCAI'24 paper: Gradformer: Graph Transformer with Exponential Decay☆47Updated 9 months ago
- Official Pytorch implementation of NeuralWalker (ICLR 2025)☆35Updated 3 months ago
- [ICLR 2023] "Mole-BERT: Rethinking Pre-training Graph Neural Networks for Molecules"☆125Updated 2 years ago
- The PyTorch implementation of MoMu, described in "Natural Language-informed Modeling of Molecule Graphs".☆29Updated 2 years ago
- Implementation of ICML'24 Paper "Less is More: on the Over-Globalizing Problem in Graph Transformers"☆46Updated last year
- Official Pytorch code for Structure-Aware Transformer.☆258Updated 2 years ago
- ☆215Updated 2 years ago
- [ICLR 2023] One Transformer Can Understand Both 2D & 3D Molecular Data (official implementation)☆215Updated 2 years ago
- [NeurIPS 2023] "Rethinking Tokenizer and Decoder in Masked Graph Modeling for Molecules"☆39Updated last year
- This is the official repository for our paper KAGNNs: Kolmogorov-Arnold Networks meet Graph Learning.☆44Updated 6 months ago
- Microsoft Graphormer (https://arxiv.org/abs/2106.05234) rewritten in Pytorch-Geometric☆153Updated last year
- Official implementation for "Cluster-wise Graph Transformer with Dual-granularity Kernelized Attention" (NeurIPS2024 Spotlight)☆14Updated 11 months ago
- Official Implementation of ICML 2023 paper: "A Generalization of ViT/MLP-Mixer to Graphs"☆165Updated last year
- Official implementation for the paper "Learning Substructure Invariance for Out-of-Distribution Molecular Representations" (NeurIPS 2022)…☆61Updated 2 years ago
- The code for "Graph Diffusion Transformer for Multi-Conditional Molecular Generation"☆88Updated 4 months ago
- ☆37Updated last year
- EDGE: Efficient and Degree-Guided Graph Generation via Discrete Diffusion Modeling☆65Updated 4 months ago
- Repository for Text2Mol: Cross-Modal Molecular Retrieval with Natural Language Queries☆46Updated 6 months ago
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆66Updated 6 months ago