MBZUAI / AI4Bio-Reading-ListLinks
Must-read papers on AI for Biology
☆19Updated last year
Alternatives and similar repositories for AI4Bio-Reading-List
Users that are interested in AI4Bio-Reading-List are comparing it to the libraries listed below
Sorting:
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆50Updated last year
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆53Updated 9 months ago
- Large Language Models in Protein: A Comprehensive Survey☆124Updated 5 months ago
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆18Updated last month
- Gene expression time-series extrapolation for heterogeneous data☆18Updated 2 years ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆66Updated 6 months ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆194Updated 2 weeks ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆87Updated 2 months ago
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆51Updated 3 months ago
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆223Updated 5 months ago
- BioKGBench: A Knowledge Graph Checking Benchmark of AI Agent for Biomedical Science☆21Updated 11 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated last year
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆58Updated 4 months ago
- Scientific Large Language Models: A Survey on Biological & Chemical Domains☆329Updated 2 weeks ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Updated 11 months ago
- ☆37Updated 3 months ago
- [COLM 2024] Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation☆14Updated last year
- ☆43Updated 2 years ago
- ☆30Updated last year
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆20Updated 5 months ago
- ☆23Updated 6 months ago
- ☆81Updated last week
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Updated 2 months ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆254Updated 3 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆254Updated last month
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆49Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆95Updated 2 years ago
- Jailbreak Evo☆17Updated 3 months ago