MBZUAI / AI4Bio-Reading-ListLinks
Must-read papers on AI for Biology
☆19Updated 2 years ago
Alternatives and similar repositories for AI4Bio-Reading-List
Users that are interested in AI4Bio-Reading-List are comparing it to the libraries listed below
Sorting:
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆51Updated last year
- Large Language Models in Protein: A Comprehensive Survey☆131Updated 6 months ago
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆55Updated 2 weeks ago
- BioKGBench: A Knowledge Graph Checking Benchmark of AI Agent for Biomedical Science☆22Updated 11 months ago
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆19Updated 2 months ago
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆226Updated 5 months ago
- ☆93Updated 2 weeks ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆195Updated last week
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆51Updated 4 months ago
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆67Updated 6 months ago
- Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".☆12Updated last year
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆90Updated 3 months ago
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year
- [COLM 2024] Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation☆14Updated last year
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Updated 3 months ago
- Gene expression time-series extrapolation for heterogeneous data☆18Updated 2 years ago
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Updated 4 months ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Updated last year
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆119Updated last year
- ☆23Updated 2 weeks ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆49Updated last year
- ☆23Updated 4 months ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆258Updated 4 months ago
- Scientific Large Language Models: A Survey on Biological & Chemical Domains☆334Updated last month
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated last year
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆149Updated 7 months ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆61Updated 5 months ago
- ☆39Updated 4 months ago
- [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models☆286Updated 11 months ago