westlake-autolab / BioKGBenchLinks
BioKGBench: A Knowledge Graph Checking Benchmark of AI Agent for Biomedical Science
☆24Updated last year
Alternatives and similar repositories for BioKGBench
Users that are interested in BioKGBench are comparing it to the libraries listed below
Sorting:
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆55Updated last year
- A Protein Large Language Model for Multi-Task Protein Language Processing☆201Updated 2 months ago
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆69Updated last week
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆233Updated this week
- [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models☆288Updated last year
- ☆51Updated last year
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆99Updated 2 years ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆122Updated last year
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆91Updated 4 months ago
- ☆20Updated 8 months ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated 2 years ago
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆92Updated 2 months ago
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆76Updated last year
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆60Updated 2 months ago
- The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"☆72Updated last year
- InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery (COLING 2025)☆50Updated 11 months ago
- Large Language Models in Protein: A Comprehensive Survey☆154Updated 7 months ago
- The code for "Learning Molecular Representation in a Cell"☆37Updated 8 months ago
- ☆116Updated 2 weeks ago
- ☆51Updated last year
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Updated 5 months ago
- OriGene: A Self-Evolving Virtual Disease Biologist for Mechanism-Guided Therapeutic Target Discovery☆166Updated 3 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆50Updated last year
- ☆12Updated 2 years ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆96Updated 10 months ago
- ☆39Updated 5 months ago
- Official Code for What can Large Language Models do in chemistry? A comprehensive benchmark on eight tasks (In NeurIPS 2023)☆162Updated last year
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆68Updated last year
- Contrastive learning harmonizing protein language models and natural language models☆38Updated last year
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆12Updated last year