westlake-autolab / BioKGBench
BioKGBench: A Knowledge Graph Checking Benchmark of AI Agent for Biomedical Science
☆16Updated 7 months ago
Alternatives and similar repositories for BioKGBench
Users that are interested in BioKGBench are comparing it to the libraries listed below
Sorting:
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆69Updated last year
- ☆26Updated last month
- ☆12Updated 2 years ago
- ☆15Updated 2 months ago
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆22Updated 5 months ago
- The code for "Learning Molecular Representation in a Cell"☆33Updated 2 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆68Updated 5 months ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆112Updated 8 months ago
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆49Updated last year
- ☆45Updated last year
- ☆24Updated 3 weeks ago
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆209Updated last month
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆97Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆39Updated 9 months ago
- ☆50Updated 11 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆78Updated 4 months ago
- ☆33Updated last year
- ☆13Updated 2 months ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆51Updated last year
- A Biological Foundation Model Bridging the Gap between Molecular Sequences Through Central Dogma☆27Updated 2 months ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆175Updated 2 weeks ago
- Must-read papers on NLP for science.☆57Updated last year
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆45Updated last year
- ☆12Updated last year
- Gene expression time-series extrapolation for heterogeneous data☆17Updated 2 years ago
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆50Updated 2 months ago
- ☆20Updated 7 months ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Updated last year
- ☆31Updated 7 months ago
- Large Language Models in Protein: A Comprehensive Survey☆80Updated last month