How to start with Jupyter, Python, Libs, Github and Models
☆13May 18, 2022Updated 3 years ago
Alternatives and similar repositories for basics
Users that are interested in basics are comparing it to the libraries listed below
Sorting:
- Yasara plugins for Gromacs users☆33Jan 8, 2024Updated 2 years ago
- Home of the public Martini 3 lipid parameters☆19Sep 29, 2025Updated 5 months ago
- ☆12Jul 30, 2019Updated 6 years ago
- Programming for Biology @ CSHL 2023☆14Oct 17, 2025Updated 4 months ago
- Jupyter Notebooks for Molecular Dynamics☆42Jul 13, 2025Updated 7 months ago
- ☆10Mar 31, 2023Updated 2 years ago
- A registry of publicly available datasets on AWS☆11Sep 8, 2023Updated 2 years ago
- ☆14Nov 1, 2017Updated 8 years ago
- Python wrapper around KINSOL (from the sundials library)☆10Nov 24, 2025Updated 3 months ago
- energetic sorting of conformer rotamer ensembles☆10Sep 12, 2022Updated 3 years ago
- Course on topology in condensed matter☆10Apr 19, 2016Updated 9 years ago
- A course in numerical methods with Python for engineers and scientists: currently 5 learning modules, with student assignments.☆10Dec 6, 2017Updated 8 years ago
- Automated DFT Input File Generator using wxDragon☆15Sep 21, 2023Updated 2 years ago
- PyTorch tutorials.☆11Apr 6, 2021Updated 4 years ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- Tutorial using PLANTS (Protein-Ligand ANTSystem)☆13Jul 27, 2024Updated last year
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated last week
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 2 months ago
- ☆12Jul 22, 2025Updated 7 months ago
- predict ethnicity from names☆13Mar 12, 2025Updated 11 months ago
- ☆21Jul 7, 2022Updated 3 years ago
- A python interface for the CIViC db application☆11Feb 19, 2026Updated last week
- Course materials for CU Boulder CSCI 5636 Numerical Solution of Partial Differential Equations☆16Aug 27, 2018Updated 7 years ago
- Helpful utility APIs for PyTorch projects.☆10Jul 25, 2024Updated last year
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated 6 months ago
- Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations☆15Updated this week
- Notebooks and files from the paper De novo Design and Bioactivity Prediction of SARS-CoV-2 Main Protease Inhibitors using Recurrent Neura…☆14Jan 13, 2023Updated 3 years ago
- A server to automatically grading coding assignments.☆17Feb 23, 2026Updated last week
- ☆11Dec 22, 2023Updated 2 years ago
- Tool to analyze the charge evolution in a reaction pathway as derived from the nudged elastic band (NEB) method in VASP☆15Jan 2, 2022Updated 4 years ago
- my blog☆10Nov 1, 2025Updated 4 months ago
- Compile quizzes from a single source to many formats (PDF, HTML, Canvas, Gradescope, etc.).☆18Jan 10, 2026Updated last month
- The Vini in silico model of cancer☆12Feb 17, 2026Updated 2 weeks ago
- LaTeX Thesis Template for The University of Waterloo☆12Oct 29, 2021Updated 4 years ago
- daily SARS-CoV2 Re Values for select countries. See https://ibz-shiny.ethz.ch/covid-19-re/ for interactive visualisations.☆13Mar 23, 2023Updated 2 years ago
- A recurrent neural network (RNN) that generates drug-like molecules for drug discovery.☆11May 4, 2022Updated 3 years ago
- ☆19Feb 6, 2017Updated 9 years ago