tiwarylab / RAVE
Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)
☆42Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for RAVE
- Automatic Mutual Information Noise Omission☆14Updated last month
- A python implementation of the string method with swarms of trajectories using GROMACS☆17Updated 2 years ago
- Supporting material for the paper "Data driven collective variables for enhanced sampling"☆15Updated 5 months ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated last year
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆60Updated last year
- A fast solver for large scale MBAR/UWHAM equations☆37Updated 2 months ago
- MLP training for molecular systems☆40Updated 2 weeks ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆41Updated 3 years ago
- A package for all physics based/related models☆42Updated 2 months ago
- A python package for performing GROMACS simulation ensembles☆13Updated this week
- Spectral Gap Optimization of Parameters☆17Updated 4 years ago
- SO3krates and Universal Pairwise Force Field for Molecular Simulation☆58Updated 3 weeks ago
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆19Updated 5 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆22Updated 3 years ago
- Python library for adaptive QM/MM methods☆26Updated 4 years ago
- 📐 Symmetry-corrected RMSD in Python☆85Updated this week
- ☆93Updated 2 months ago
- ☆59Updated this week
- A unified framework for machine learning collective variables for enhanced sampling simulations☆92Updated this week
- Martini 3 small-molecule database☆54Updated 3 months ago
- A comprehensive tool for analyzing liquid solvation structure.☆46Updated 4 months ago
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆31Updated 3 years ago
- OpenMM plugin to interface with PLUMED☆59Updated last week
- ☆28Updated 3 months ago
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆95Updated 4 months ago
- PSP is a python toolkit for predicting atomic-level structural models for a range of polymer geometries.☆32Updated 4 months ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆61Updated this week
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆14Updated last year
- ☆57Updated this week
- Automatic MARTINI parametrization of small organic molecules☆61Updated 2 weeks ago