COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3
☆43Nov 25, 2025Updated 3 months ago
Alternatives and similar repositories for COBY
Users that are interested in COBY are comparing it to the libraries listed below
Sorting:
- Multiscale Simulation Tool for Backmapping☆22Feb 7, 2026Updated 3 weeks ago
- Martini 3 Building Blocks for Lipid Nanoparticle Design☆22Feb 4, 2026Updated last month
- TS2CG version 2☆26Feb 26, 2026Updated last week
- Build coarse-grained mapping for molecules from a web-GUI☆18Sep 10, 2021Updated 4 years ago
- Home of the public Martini 3 lipid parameters☆19Sep 29, 2025Updated 5 months ago
- Density based object completion over PBC.☆30Dec 10, 2024Updated last year
- ☆19Feb 6, 2017Updated 9 years ago
- Convenience functions for VMD-TCL scripting☆14Jul 16, 2025Updated 7 months ago
- Describe and apply transformation on molecular structures and topologies☆139Feb 24, 2026Updated last week
- A Program for Molecular Structure and Topology Generation of Polymer-Grafted Hybrid Nanostructures☆13Jan 12, 2026Updated last month
- Machine learning for molecular dynamics☆13Jan 9, 2025Updated last year
- Advanced tutorials for WESTPA 2.0☆15Updated this week
- Data and script of Umbrella Sampling for molecular transmembrane☆14Jun 21, 2024Updated last year
- Automatic generation of LAMMPS data file for atomistic and coarse-grained simulations of molecular and polymeric materials with various t…☆17Feb 4, 2026Updated last month
- ☆32Sep 23, 2023Updated 2 years ago
- Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible☆35Feb 16, 2026Updated 2 weeks ago
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆46Aug 19, 2024Updated last year
- MDAnalysis tool to calculate membrane curvature.☆35Jul 25, 2025Updated 7 months ago
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆78Updated this week
- LOOS: a lightweight object-oriented structure analysis library☆128Oct 20, 2025Updated 4 months ago
- Some of useful tcl scripts to analyse data from VMD☆15Aug 2, 2022Updated 3 years ago
- A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.☆32Nov 5, 2025Updated 4 months ago
- Automated bonded parameters for Martini 3☆25Jul 20, 2025Updated 7 months ago
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆26Jan 21, 2026Updated last month
- The MDAnalysis Toolkits Registry☆19Feb 22, 2026Updated last week
- easyPARM is a computational tool developed to simplify the derivation of force field parameters for metal-containing molecular systems an…☆32Updated this week
- For the purpose of post progressing of MD carried by gromacs☆23Jul 2, 2025Updated 8 months ago
- Python module for identification of conserved water molecules from molecular dynamics trajectories.☆14Feb 12, 2026Updated 3 weeks ago
- Main repository for METAGUI3☆20Jun 19, 2021Updated 4 years ago
- ☆28Aug 26, 2025Updated 6 months ago
- Input files for GROMACS tutorials written for the Journal of Physical Chemistry B☆24Jul 21, 2024Updated last year
- rid☆23Aug 15, 2021Updated 4 years ago
- Educational Notes on Molecular Modeling☆13Nov 19, 2020Updated 5 years ago
- ☆17May 15, 2025Updated 9 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43May 15, 2024Updated last year
- Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates☆184Dec 19, 2025Updated 2 months ago
- ☆15Jan 31, 2026Updated last month
- ☆45Feb 17, 2026Updated 2 weeks ago
- ☆26Jan 20, 2022Updated 4 years ago