noegroup / reformLinks
A simple implementation of replica exchange MD simulations for OpenMM.
☆23Updated 4 years ago
Alternatives and similar repositories for reform
Users that are interested in reform are comparing it to the libraries listed below
Sorting:
- Enhanced sampling methods for molecular dynamics simulations☆38Updated 2 years ago
- ☆39Updated last year
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆29Updated 2 weeks ago
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆35Updated 3 weeks ago
- Package for consistent reporting of relative free energy results☆39Updated last week
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated last year
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆14Updated last week
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆12Updated 3 weeks ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated last week
- Standalone charge assignment from Espaloma framework.☆40Updated last year
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆25Updated 5 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- Force Fields☆64Updated 7 months ago
- Robust Equilibration Detection☆24Updated 4 months ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Set up relative free energy calculations using a common scaffold☆24Updated 3 weeks ago
- ☆30Updated last month
- Transferable Double Exponential non-bonded potential for condensed phase simulations of small molecules☆23Updated last year
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- A fast solver for large scale MBAR/UWHAM equations☆39Updated last year
- Bayesian Multistate Bennett Acceptance Ratio Method☆15Updated last month
- Useful Collective Variables for OpenMM☆14Updated last year
- ☆56Updated 2 years ago
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆22Updated 5 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆76Updated this week
- Absolute solvation free energy calculations with OpenFF and OpenMM☆23Updated 9 months ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 3 years ago
- ☆44Updated 3 years ago