openmm / openmm_workshops
☆33Updated 6 months ago
Alternatives and similar repositories for openmm_workshops:
Users that are interested in openmm_workshops are comparing it to the libraries listed below
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- Analysis of non-covalent interactions in MD trajectories☆54Updated 2 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆30Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated last year
- ☆26Updated last week
- ☆53Updated last year
- Python code for generating Boresch restraints from MD simulations☆19Updated 2 years ago
- Set up relative free energy calculations using a common scaffold☆22Updated 6 months ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆31Updated 5 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆15Updated last year
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆18Updated 2 years ago
- ☆11Updated 9 months ago
- A collections of scripts for working molecular dynamics simulations☆42Updated 9 months ago
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆35Updated last week
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆66Updated last year
- KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.☆29Updated 9 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆23Updated 3 weeks ago
- Temperature generator for Replica Exchange MD simulations☆27Updated 2 years ago
- Standalone charge assignment from Espaloma framework.☆39Updated 8 months ago
- Tools to build coarse grained models and perform simulations with OpenMM☆21Updated 2 years ago
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆15Updated 8 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆44Updated 4 years ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆27Updated 2 weeks ago
- A simple yet versatile toolkit to setup quantum mechanical/molecular mechanical (QM/MM) calculations from molecular dynamics trajectories…☆28Updated last year
- A comprehensive toolkit for predicting free energies☆51Updated 2 months ago
- Package for consistent reporting of relative free energy results☆37Updated 2 months ago
- ☆64Updated last year
- Advanced toolkit for binding free energy calculations☆32Updated 2 months ago
- A tutorials suite for BioSimSpace.☆24Updated 3 weeks ago