paulrobustelli / Force-FieldsLinks
Force Fields
☆64Updated 6 months ago
Alternatives and similar repositories for Force-Fields
Users that are interested in Force-Fields are comparing it to the libraries listed below
Sorting:
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆83Updated last month
- ☆68Updated last year
- ☆56Updated 2 years ago
- ☆38Updated 11 months ago
- The public versio☆61Updated 2 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆39Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- ☆33Updated 10 months ago
- Simple protein-ligand complex simulation with OpenMM☆87Updated last year
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆42Updated last month
- ☆44Updated 3 years ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆79Updated 2 years ago
- MDANCE is a flexible n-ary clustering package for all applications.☆70Updated last month
- ☆67Updated 2 years ago
- Automated Adaptive Absolute alchemical Free Energy calculator☆105Updated last month
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆66Updated 2 years ago
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆50Updated 4 months ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 3 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆71Updated 7 months ago
- An Open-Source Molecular Builder and Free Energy Preparation Workflow☆128Updated this week
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆50Updated 2 months ago
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- ☆14Updated 8 months ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆61Updated last year
- ☆65Updated last month
- Adds or removes hydrogen atoms to achieve the appropriate molecular protonation state for a user-specified pH range☆41Updated 2 weeks ago
- The official repository of Uni-pKa☆66Updated 4 months ago
- OpenMM plugin to interface with PLUMED☆68Updated 5 months ago