Alternatives and similar repositories for 3Cnet

Users that are interested in 3Cnet are comparing it to the libraries listed below

• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated last year
• mhorlacher / rbpnet
  ☆19Updated last year
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆15Updated 11 months ago
• odb9402 / CNNPeaks
  The ChIP-Seq peak calling algorithm using convolution neural networks
  ☆15Updated 5 years ago
• tsailabSJ / changeseq
  CHANGE-seq analysis pipeline
  ☆11Updated last month
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆15Updated 4 years ago
• Illumina / PrimateAI-3D
  ☆72Updated 2 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• goodarzilab / SwitchFinder
  ☆20Updated last year
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 3 years ago
• gagneurlab / SpeciesLM
  Species-aware DNA language models capture regulatory elements and their evolution
  ☆27Updated 2 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated last year
• Illumina / PromoterAI
  ☆88Updated 2 months ago
• briney / abtools
  Analysis of antibody NGS data
  ☆13Updated 3 years ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆69Updated last year
• gagneurlab / dependencies_DNALM
  Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements
  ☆25Updated 10 months ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆27Updated 3 years ago
• debbiemarkslab / popEVE
  ☆48Updated 5 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• jzhoulab / puffin_manuscript
  ☆18Updated last year
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 10 months ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆24Updated last year
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆39Updated 10 months ago
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆44Updated 2 years ago
• FunctionLab / DeepArk
  Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning
  ☆17Updated 4 years ago
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated last year