Code for running PottsMPNN to generate sequences and predict energies
☆44Oct 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for PottsMPNN
Users that are interested in PottsMPNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆93Sep 30, 2026Updated last month
- ☆24Aug 6, 2026Updated 2 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆39Apr 2, 2025Updated last year
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆96Jun 1, 2026Updated 4 months ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 9 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Structure-based antibody renumbering☆17Updated this week
- ☆17Aug 17, 2026Updated 2 months ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆47Mar 22, 2026Updated 7 months ago
- ☆12May 3, 2025Updated last year
- ☆147Jun 16, 2026Updated 4 months ago
- De novo Design of Macrocyclic Molecular Glues☆33Oct 14, 2026Updated 2 weeks ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆95Oct 15, 2026Updated 2 weeks ago
- ☆16May 19, 2024Updated 2 years ago
- Generative biopolymer design with rich conditioning.☆505Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆38Feb 4, 2026Updated 8 months ago
- ☆159May 18, 2026Updated 5 months ago
- A unified framework for making structural biology tools interoperable.☆146Oct 23, 2026Updated last week
- Easy to use suite for designing a wide range of protein binder modalities.☆460Oct 23, 2026Updated last week
- mosaic webapp☆13Apr 2, 2026Updated 6 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆282Jan 3, 2026Updated 9 months ago
- ☆462Updated this week
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆50Nov 4, 2025Updated 11 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆90Jul 2, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Official implementation of "Rigidity-Aware Geometric Pretraining for Protein Design and Conformational Ensembles" (ICLR 2026)☆20Mar 16, 2026Updated 7 months ago
- composite-objective protein design☆380Updated this week
- code for SeqDance/ESMDance, biophysics-informed protein language models☆66Jan 28, 2026Updated 9 months ago
- Miniprotein and antibody design pipeline for ESMFold2☆47Sep 23, 2026Updated last month
- ☆33Dec 12, 2024Updated last year
- Physical energy function for protein sequence design☆46May 6, 2023Updated 3 years ago
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆151Oct 21, 2026Updated last week
- ☆15Mar 28, 2025Updated last year
- Garnet biomolecular force field☆13Sep 18, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆138Oct 12, 2026Updated 2 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆279Sep 9, 2026Updated last month
- ☆88Mar 23, 2026Updated 7 months ago
- de novo design of high affinity biological binders☆204Sep 1, 2026Updated last month
- Biomolecular co-folding, binder filtering, and nanobody design☆93Jun 28, 2026Updated 4 months ago
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆95Sep 4, 2026Updated last month
- ☆72Oct 13, 2026Updated 2 weeks ago