pulimeng / CancerOmicsNet
A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines
☆16Updated last year
Related projects ⓘ
Alternatives and complementary repositories for CancerOmicsNet
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- ☆16Updated 3 years ago
- ☆14Updated 4 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- Predict drug response with graph convolutional network.☆9Updated 3 years ago
- A deep learning model to predict anticancer peptides.☆22Updated 5 years ago
- ☆13Updated 2 years ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆30Updated last year
- SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction☆19Updated 4 years ago
- ☆31Updated 5 years ago
- Model to predict kinase-ligand pKi values.☆12Updated last year
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆48Updated 6 months ago
- ☆27Updated 4 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆46Updated 3 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆24Updated 3 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆53Updated 4 years ago
- ☆14Updated 2 months ago
- ☆29Updated last year
- This repository provides an implementation of the DTi2Vec tool, to identify Drug-Target interaction using network embedding and ensemble …☆12Updated 3 years ago
- ☆9Updated 4 years ago
- Prediction of Protein-Small molecule binding affinities☆14Updated last month
- Implements the blood brain barrier score described in: J. Med. Chem. 2019, 62, 21, 9824-9836 (https://doi.org/10.1021/acs.jmedchem.9b0122…☆12Updated 4 years ago
- ☆15Updated 6 years ago
- ☆27Updated last year
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆14Updated 3 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Updated 5 years ago
- Supplementary data for the ACME algorithm☆22Updated 2 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆25Updated 2 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Updated 4 years ago