Alternatives and similar repositories for uGUIDE:

Users that are interested in uGUIDE are comparing it to the libraries listed below

• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆69Updated this week
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated 2 weeks ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 4 months ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆50Updated 9 months ago
• Haoyulance / WPSS
  Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter
  ☆13Updated last year
• SteenMoeller / NORDIC_Raw
  Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
  ☆60Updated 6 months ago
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆64Updated last year
• sameerd / DiffusionTensorImaging
  Single Shell Free Water Elimination Model for Diffusion Tensor Imaging
  ☆25Updated last year
• EhsanTadayon / choroid-plexus-segmentation
  Segmentation of Choroid Plexus using Gaussian Mixture Model
  ☆14Updated 3 weeks ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated 5 months ago
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆48Updated last week
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆57Updated 2 years ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆68Updated this week
• RafaelNH / Free-water-elimination-DTI
  Reproduce the artice Hoy et al. 2014 Optimization of a free water elimination two-compartment model for diffusion tensor imaging. Neuroim…
  ☆13Updated 6 years ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆26Updated this week
• gbarisano / alps
  Bash script to compute DTI-ALPS
  ☆50Updated 2 months ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆95Updated 8 months ago
• Diffusion-MRI / awesome-preclinical-diffusion-mri
  ☆17Updated last year
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆69Updated 9 months ago
• AICONSlab / SynthSegCSVD
  CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI
  ☆13Updated last month
• ecaruyer / qspace
  q-space: multishell sampling and continuous reconstruction of diffusion signal
  ☆17Updated 5 months ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆105Updated 5 months ago
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆35Updated 4 months ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆76Updated last month
• vzachari / IronSmithQSM
  Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…
  ☆23Updated last year
• hufsaim / pvsseg
  perivascular space segmentation
  ☆14Updated 2 years ago
• iBrain-Lab / PINGU
  Perivascular-space Identification Network using a Generalisable Unet
  ☆12Updated last month
• Center-of-Imaging-Biomarker-Development / chp_seg
  Segmentation tool for the delineation and volumetric quantification of the choroid plexus
  ☆15Updated last month
• NYU-DiffusionMRI / SMI
  Toolbox for parameter estimation of the Standard Model of diffusion in white matter
  ☆24Updated last month