SwissTPH / OpenCOVIDLinks
Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.
☆11Updated last year
Alternatives and similar repositories for OpenCOVID
Users that are interested in OpenCOVID are comparing it to the libraries listed below
Sorting:
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Updated 4 years ago
- R package for deriving social mixing matrices from survey data.☆40Updated this week
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆11Updated 10 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated last week
- Flu Scenario Modeling Hub☆12Updated 3 months ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆25Updated 7 months ago
- Updates to the synthetic contact matrices☆37Updated last year
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆49Updated this week
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 4 months ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆99Updated last month
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- A framework for data-driven stochastic disease spread simulations☆35Updated last week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆62Updated this week
- ☆41Updated last month
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆35Updated 2 weeks ago
- ☆42Updated last week
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆55Updated 9 months ago
- Inferring high-resolution human mixing patterns for disease modeling☆46Updated 2 years ago
- COVID-19 Scenario Modeling Hub☆67Updated 3 months ago
- The Flexible Epidemic Modeling Pipeline☆9Updated last week
- European Covid-19 Forecast Hub.☆48Updated 9 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated this week
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 7 months ago
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Simulation-based Inference for Epidemiological Dynamics☆25Updated 3 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago