Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.
☆12Jul 16, 2024Updated last year
Alternatives and similar repositories for OpenCOVID
Users that are interested in OpenCOVID are comparing it to the libraries listed below
Sorting:
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Jul 13, 2021Updated 4 years ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆28Jan 5, 2026Updated last month
- A deque for R.☆29Mar 13, 2022Updated 3 years ago
- The realization of Kernel Principle Component Analysis (KPCA) and its applications (Code + Description).☆12Sep 9, 2019Updated 6 years ago
- Collated optimization models from numerous sources☆13Jun 18, 2023Updated 2 years ago
- Time control for simulations☆11Jan 18, 2023Updated 3 years ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Oct 30, 2023Updated 2 years ago
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆10Sep 10, 2024Updated last year
- R package for simulating and analyzing temporally autocorrelated populations.☆10Apr 11, 2024Updated last year
- ☆15Jun 4, 2020Updated 5 years ago
- R package that provides an implementation of the generic adaptive Monte Carlo Markov chain sampler proposed by Vihola (2011).☆10Jan 29, 2024Updated 2 years ago
- C++ code for implementations of the temporal Gillespie algorithm.☆11Feb 16, 2019Updated 7 years ago
- Covid-19 weibo rumor dataset, collected from 2020.1.22 to 2021.4.22☆12Jun 27, 2021Updated 4 years ago
- miscellaneous talks and small projects☆11Jan 23, 2026Updated last month
- Automated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages☆11Apr 19, 2022Updated 3 years ago
- Opinionated viral metagenomics workflow☆11Feb 23, 2026Updated last week
- Applied category theory applied to epidemiological models☆12Aug 7, 2024Updated last year
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 11 years ago
- Inference for State Space Models like playing with duplo blocks☆25May 9, 2017Updated 8 years ago
- source code for VESAEA, paper in CEC2019☆10Mar 27, 2019Updated 6 years ago
- Survival modelling via ODEs☆11Mar 17, 2025Updated 11 months ago
- ☆11Apr 15, 2020Updated 5 years ago
- Julia modeling framework for hydropower operations.☆12Nov 4, 2021Updated 4 years ago
- Points of Significance: Adding realism to the SIR model for infectious disease epidemics☆12Nov 30, 2021Updated 4 years ago
- Rcpp Example for accessing NLopt☆14Jan 27, 2026Updated last month
- The Research Software Engineer community projects☆11Apr 13, 2025Updated 10 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Aug 31, 2022Updated 3 years ago
- Kernel density estimation with Ripley's Circumferential correction☆16Mar 8, 2018Updated 7 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆17Feb 18, 2026Updated last week
- OpenShift cartridge for DreamFactory☆10Mar 26, 2017Updated 8 years ago
- Discrete-Event Simulation in R☆11Sep 14, 2017Updated 8 years ago
- Additional censored event tools for Distributions.jl☆14Feb 24, 2026Updated last week
- SIR-Hawkes: Linking Epidemic Models and Hawkes Processes to Model Diffusions in Finite Populations☆14Apr 15, 2018Updated 7 years ago
- ☆15Aug 18, 2021Updated 4 years ago
- ☆19Updated this week
- Materials for workshop on GPU computation for statistics, data science, machine learning applications.☆14Sep 8, 2016Updated 9 years ago
- ☆13Sep 23, 2019Updated 6 years ago
- Results and software for our paper on structured epidemic modeling☆16Sep 21, 2022Updated 3 years ago