SwissTPH / OpenCOVID
Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.
☆11Updated 8 months ago
Alternatives and similar repositories for OpenCOVID:
Users that are interested in OpenCOVID are comparing it to the libraries listed below
- R package for deriving social mixing matrices from survey data.☆38Updated last month
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 2 weeks ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- ☆33Updated last week
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Updates to the synthetic contact matrices☆36Updated last year
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated this week
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Updated 3 years ago
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆11Updated 6 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated 10 months ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 3 months ago
- ☆40Updated 8 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆125Updated this week
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆47Updated 3 weeks ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆96Updated 7 months ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 3 months ago
- Flu Scenario Modeling Hub☆11Updated last month
- COVID-19 Scenario Modeling Hub☆67Updated this week
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- A framework for data-driven stochastic disease spread simulations☆35Updated this week
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- ☆19Updated 2 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆53Updated 5 months ago
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- An R package with Dynamic Models of infectious diseases☆29Updated 4 months ago
- ☆41Updated 2 weeks ago