SwissTPH / OpenCOVIDLinks
Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.
☆11Updated last year
Alternatives and similar repositories for OpenCOVID
Users that are interested in OpenCOVID are comparing it to the libraries listed below
Sorting:
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated last week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- R package for deriving social mixing matrices from survey data.☆40Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆99Updated 3 months ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆49Updated this week
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Updated 4 years ago
- Updates to the synthetic contact matrices☆37Updated last year
- Flu Scenario Modeling Hub☆12Updated 4 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- epidemia package☆48Updated 3 years ago
- A framework for data-driven stochastic disease spread simulations☆35Updated this week
- ☆41Updated last month
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆25Updated 8 months ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆62Updated 3 weeks ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- Inferring high-resolution human mixing patterns for disease modeling☆46Updated 2 years ago
- COVID-19 Scenario Modeling Hub☆67Updated 4 months ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆11Updated last year
- European Covid-19 Forecast Hub.☆48Updated 10 months ago
- ☆44Updated this week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆35Updated 3 weeks ago
- ☆40Updated last year
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Updated last year
- Text project for theoretical primer on human evolutionary ecology☆35Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago