SwissTPH / OpenCOVID
Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.
☆11Updated 6 months ago
Alternatives and similar repositories for OpenCOVID:
Users that are interested in OpenCOVID are comparing it to the libraries listed below
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆59Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 8 months ago
- ☆39Updated this week
- Updates to the synthetic contact matrices☆36Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆119Updated this week
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆18Updated this week
- R package for deriving social mixing matrices from survey data.☆38Updated last month
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- Flu Scenario Modeling Hub☆10Updated 2 weeks ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆53Updated 3 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 4 months ago
- Some code for monkeypox☆10Updated 2 years ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆46Updated last month
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- ☆19Updated last year
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 2 years ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated last month
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- R package for statistical inference using partially observed Markov processes☆115Updated 2 weeks ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆33Updated this week
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated last month
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Updated 3 years ago
- ☆31Updated this week
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago