Create a networkx.DiGraph object from a KEGG pathway file, with python
☆11Aug 1, 2014Updated 12 years ago
Alternatives and similar repositories for kegg-kgml-parser-python
Users that are interested in kegg-kgml-parser-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Package that facilitates pulling database entries from KEGG via its REST API☆15Aug 12, 2026Updated 2 months ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆14May 15, 2023Updated 3 years ago
- Arduino library for interfacing with MAX6675 thermocouple amplifier forked from Adafruit☆16Feb 15, 2019Updated 7 years ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Web app for visualizing models of small-scale gene regulatory and protein-protein interaction networks.☆17Updated this week
- Getting started docs, examples, tutorials, and use cases.☆12Jun 15, 2021Updated 5 years ago
- An open source two key macro-pad modeled to look like a cartoony melting popsicle.☆18Jan 11, 2022Updated 4 years ago
- CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data☆11Jul 11, 2024Updated 2 years ago
- An ES2015 rip-off of the great boardgame Ticket to Ride.☆19Jul 13, 2017Updated 9 years ago
- A bioinformatics library for Scala☆12Feb 22, 2017Updated 9 years ago
- Code to build models that effectively predict promoter-driven gene expression☆12May 15, 2025Updated last year
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- Bash script to download all lecture videos & notes for a particular course on Coursera.org.☆13Dec 25, 2015Updated 10 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆11Jul 1, 2025Updated last year
- ☆19May 11, 2017Updated 9 years ago
- PyTorch implements `Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning` paper.☆14Aug 19, 2022Updated 4 years ago
- BoostDiff - Inference of differential networks from gene expression data☆14Jan 11, 2024Updated 2 years ago
- SHApe simulation with graph KERnels☆10May 17, 2021Updated 5 years ago
- ☆14Nov 22, 2022Updated 3 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆12Feb 10, 2024Updated 2 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 4 years ago
- Python implementation of closed frequent subgraph mining algorithm cgSpan. Only undirected graphs are currently supported.☆13Dec 20, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Mar 5, 2018Updated 8 years ago
- Easily draw publication-quality figures of splicing quantitative trait loci☆16Feb 2, 2018Updated 8 years ago
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Greedy Randomized Adaptive Search Procedure (GRASP) using Python☆10Nov 25, 2016Updated 9 years ago
- OrgoShmorgo is an organic molecule visualizer built using D3.js☆18Aug 14, 2022Updated 4 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- Gene Neural Network (GNN)☆12Oct 5, 2019Updated 7 years ago
- Draw / find polygons fast without opencv, useful in machine learning pipelines.☆23Aug 12, 2026Updated 2 months ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- OME-TIFF IO in python☆28Apr 10, 2025Updated last year
- ☆13Jul 26, 2022Updated 4 years ago
- Implementation of the Auto-Encoding Variational Bayes paper in Pytorch with detailed explanation.☆14Aug 7, 2023Updated 3 years ago
- It's a script that controls the fan on a nvidia graphics card☆21Nov 6, 2020Updated 5 years ago
- A curated list of community detection research papers with implementations.☆13Jan 2, 2020Updated 6 years ago
- Frequent subgraph mining using FFSM algorithm, C++☆11Jan 15, 2018Updated 8 years ago
- Web content for Meren Lab☆12Oct 12, 2026Updated last week