Alternatives and similar repositories for protein-uq:

Users that are interested in protein-uq are comparing it to the libraries listed below

• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆33Updated 3 months ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆19Updated last year
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆46Updated last month
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆19Updated last year
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆22Updated 9 months ago
• colab-db / colab-db.github.io
  Repository of Jupyter Notebooks on Colab, Binder and Huggingface for Bio, Chemistry and Physics
  ☆14Updated last year
• valence-labs / mood-experiments
  Molecular Out-Of-Distribution
  ☆37Updated last year
• greglandrum / aisem23
  Repository for the SCS Spring School on Digital Chemistry
  ☆20Updated last year
• lucidrains / neural-plexer-pytorch
  Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …
  ☆50Updated last year
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆59Updated 3 weeks ago
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆37Updated last year
• meilerlab / AF2_GPCR_Kinase
  A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2
  ☆11Updated last year
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆30Updated 2 years ago
• ur-whitelab / peptide-dashboard
  Web cards/apps describing peptides
  ☆28Updated last year
• ml-jku / mgenerators-failure-modes
  Shows some of the ways molecule generation and optimization can go wrong
  ☆16Updated last year
• whitead / minimalaf
  Minimal AlphaFold
  ☆54Updated 7 months ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆56Updated 10 months ago
• ur-whitelab / maxent
  MaxEnt code for fitting simulation outcomes/statistical models to observations
  ☆16Updated 2 years ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆32Updated 2 years ago
• WaymentSteeleLab / Dyna-1
  Model for predicting micro-millisecond motions from protein sequence and/or structure
  ☆40Updated last week
• BioinfoMachineLearning / MULTICOM3
  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…
  ☆28Updated last year
• ryienh / graph-dock
  GNN enabled surrogate modeling for chemical docking
  ☆14Updated 2 years ago
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆16Updated this week
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆17Updated last year
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆37Updated 7 months ago
• josejimenezluna / xaibench_tf
  Supporting models and data to doi 10.1021/acs.jcim.1c01163
  ☆15Updated 2 years ago
• adaptyvbio / ProtFill
  Inpainting protein sequence and structure
  ☆12Updated last year
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆43Updated 2 weeks ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆43Updated 2 weeks ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year