Tools, algorithms, and frameworks for managing and analyzing neural data.
☆21Mar 21, 2022Updated 4 years ago
Alternatives and similar repositories for awesome-neural-data-tools
Users that are interested in awesome-neural-data-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Fancier logging with python.☆16Aug 28, 2026Updated last week
- A companion website for DataJoint☆10Feb 13, 2026Updated 6 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆52Aug 23, 2026Updated 2 weeks ago
- [Cell 2024]: Code for Task-driven neural network models predict neural dynamics of proprioception by Marin Vargas* and Bisi* et al.☆19Mar 25, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Python package to download neuronal morphologies☆17Aug 23, 2026Updated 2 weeks ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- Docker image for MySQL configured to work with DataJoint☆18Sep 3, 2024Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 6 years ago
- Tutorial☆11Jan 25, 2021Updated 5 years ago
- The Freely Moving Animal (FMA) Toolbox is a Matlab toolbox. Its purpose is to help analyze electrophysiological and behavioral data recor…☆15Aug 27, 2021Updated 5 years ago
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 3 years ago
- Demixed Shared Component Analysis☆13Oct 22, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- IBL core shared libraries☆68Updated this week
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- Revealing neural correlates of behavior without behavioral measurements☆18Nov 18, 2019Updated 6 years ago
- Code for neural and behavioral data analysis from the Brain Computation and Behavior Lab, aka AyA Lab, at Cornell University.☆25May 29, 2026Updated 3 months ago
- Python Neural Analysis Visualization☆19Jul 16, 2026Updated last month
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Jul 23, 2019Updated 7 years ago
- A simple GUI for automatic and manual alignment across calcium imaging sessions.☆15Jul 2, 2026Updated 2 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆82Aug 12, 2026Updated 3 weeks ago
- ☆56Jun 27, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Visualization of electrophysiological data from Elephant☆25Updated this week
- Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience☆23Updated this week
- Headless DeepLabCut (no GUI support)☆30Jun 30, 2021Updated 5 years ago
- ☆116Updated this week
- Coding exercises for Neural Data Science at CSHL in 2019☆31May 9, 2020Updated 6 years ago
- A Python interface to access neuroanatomical atlases☆185Updated this week
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…☆23Jun 20, 2022Updated 4 years ago
- A class for using ML algorithms for spike prediction☆64Feb 14, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Segmentation of anatomical structures in a common coordinate space☆36Aug 23, 2026Updated 2 weeks ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- A Julia IO type that facilitates width-limited printing☆11Mar 21, 2023Updated 3 years ago
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Self-normalizing neural network implemented in PyTorch.☆12Apr 3, 2019Updated 7 years ago
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆75Aug 25, 2026Updated last week