Alternatives and similar repositories for iDeepE

Users that are interested in iDeepE are comparing it to the libraries listed below

• Shen-Lab / Drug-Combo-Generator
  Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding
  ☆30Updated 2 years ago
• largelymfs / deepcontact
  DeepContact Software
  ☆26Updated 7 years ago
• CSBG-LSU / BionoiNet
  Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.
  ☆20Updated 4 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• hetong007 / SimBoost
  ☆7Updated 8 years ago
• Shen-Lab / gcWGAN
  Guided Conditional Wasserstein GAN for De Novo Protein Design
  ☆37Updated 4 years ago
• HYsxe / ACME
  Supplementary data for the ACME algorithm
  ☆23Updated 2 years ago
• xzenglab / TAGPPI
  ☆20Updated 2 years ago
• jowoojun / biovec
  ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.
  ☆33Updated 2 years ago
• fouticus / pipgcn
  Protein Interface Prediction using Graph Convolutional Networks
  ☆93Updated 4 years ago
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆19Updated 6 years ago
• dqwei-lab / SPVec
  SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction
  ☆19Updated 5 years ago
• Shen-Lab / BAL
  Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking
  ☆13Updated 4 years ago
• conradry / pytorch-rgn
  Recurrent Geometric Network in Pytorch
  ☆28Updated 4 years ago
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆34Updated 4 years ago
• jhmlam / NucleicNet
  ☆36Updated 2 years ago
• simonfqy / PADME
  This is the repository containing the source code for my Master's thesis research, about predicting drug-target interaction using deep le…
  ☆42Updated 6 years ago
• leeyang / ResPRE
  ResPRE is an algorithm for protein residue-residue contact-map prediction
  ☆21Updated 6 years ago
• chenxingqiang / alphafold2-docs
  A C, C++, Python project focusing on Docking analysis, Source code, Blogs, Data availability, References.
  ☆26Updated 2 years ago
• duolinwang / CapsNet_PTM
  CapsNet for Protein Post-translational Modification site prediction.
  ☆25Updated 5 years ago
• psipred / DeepCov
  Fully convolutional neural networks for protein residue-residue contact prediction
  ☆43Updated 6 years ago
• xypan1232 / iDeepS
  inferring sequence-structure motifs using deep learning
  ☆37Updated last year
• peter-i-frazier / pool
  POOL (Peptide Optimization with Optimal Learning): code for "Discovering de novo peptide substrates for enzymes using machine learning"
  ☆10Updated 6 years ago
• SimonLarsen / pdb_to_cm
  Compute protein contact map from PDB file.
  ☆11Updated 8 years ago
• bioinf-jku / interpretable_ml_drug_discovery
  Interpreting graph convolutional filters of target prediction network
  ☆48Updated 6 years ago
• FangpingWan / DeepCPI
  ☆17Updated 5 years ago
• ericmjl / protein-interaction-network
  Computes a molecular graph for protein structures.
  ☆58Updated 2 weeks ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• baldassarreFe / graphqa
  Protein quality assessment using Graph Convolutional Networks
  ☆29Updated 2 years ago
• guangyu-zhou / MuPIPR
  ☆24Updated 4 years ago