inferring RBP binding sites and motifs using local and global CNNs
☆20Sep 29, 2019Updated 6 years ago
Alternatives and similar repositories for iDeepE
Users that are interested in iDeepE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 3 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- NODE-SELECT: A Graph Neural Network Based On A Selective Propagation Technique☆21May 4, 2022Updated 4 years ago
- This is the source code of CubicGAN generating cubic crystal structures using improved WGAN.☆11Jun 6, 2022Updated 4 years ago
- Source code for "Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAE," in pytorch. NeurIPS 2…☆19Jan 13, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Game Engine Made in Python with the Pygame Module☆18Jun 3, 2022Updated 4 years ago
- Implementation of IJCAI15 cascade cnn and LSTM for protein secondary structure prediction☆37May 21, 2017Updated 9 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆12Oct 7, 2019Updated 6 years ago
- For training very deep networks☆10Jun 12, 2017Updated 9 years ago
- Deep neural network (DNN) with weight sparsity control (i.e., L1-norm regularization) improved the classification performance using whole…☆22Sep 16, 2021Updated 4 years ago
- 🚬前端自动化测试理论到实战☆12Apr 20, 2021Updated 5 years ago
- Learning structural motif representations for efficient protein structure search☆20May 2, 2017Updated 9 years ago
- Code for Paper DeepTarget, especially LSTM autoencoder☆12Nov 6, 2017Updated 8 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 6 years ago
- Neural networks for amino acid sequences☆22Feb 26, 2018Updated 8 years ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- Protein Interface Prediction using Graph Convolutional Networks☆93Oct 2, 2020Updated 5 years ago
- Swagger 是一款RESTFUL接口的文档在线自动生成+功能测试功能软件。本文简单介绍了在项目中集成swagger的方法和一些常见问题。如果想深入分析项目源码,了解更多内容,见参考资料。 Swagger 是一个规范和完整的框架,用于生成、描述、调用和可视化 RESTfu…☆17Sep 13, 2017Updated 8 years ago
- ☆10May 16, 2020Updated 6 years ago
- Unsupervised fingerprinting of disordered solids leading to analogical materials discovery.☆10Feb 14, 2023Updated 3 years ago
- Researching the forward-backward algorithm☆11Aug 3, 2018Updated 8 years ago
- This is the source code for the tutorial http://dtoebe.com/post/simple_markdown_editor_in_go-qml/☆13May 16, 2016Updated 10 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- structured sparsity regularization☆14Oct 12, 2019Updated 6 years ago
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated last year
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction☆20Jan 8, 2020Updated 6 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- ☆17Dec 12, 2017Updated 8 years ago
- CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The …☆15May 4, 2026Updated 3 months ago
- a deep learning framework for essential protein prediction☆13Mar 24, 2023Updated 3 years ago
- Quantum-Wise VNL Application for Perovskite Building and Machine Learning☆12May 14, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆34Oct 10, 2025Updated 10 months ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆11Updated this week
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- Scalable graph neural networks for materials property prediction☆64Feb 2, 2026Updated 6 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Aug 10, 2026Updated last week
- Tools to calculate descriptors from molecular dynamics and it's application to predict drug resistance.☆15Feb 20, 2023Updated 3 years ago