tiwarylab / aminoLinks
Automatic Mutual Information Noise Omission
☆15Updated 8 months ago
Alternatives and similar repositories for amino
Users that are interested in amino are comparing it to the libraries listed below
Sorting:
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆46Updated 4 years ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆43Updated 5 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆70Updated 2 years ago
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 9 months ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆13Updated last month
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- ☆36Updated 9 months ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- OpenMM plugin to interface with PLUMED☆66Updated 3 months ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- Density based object completion over PBC.☆30Updated 6 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆37Updated 11 months ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆31Updated 2 weeks ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 2 years ago
- A python package for performing GROMACS simulation ensembles☆13Updated last month
- Optimization of OpenFF parameters using ForceBalance and QCArchive☆11Updated 3 years ago
- Spectral Gap Optimization of Parameters☆18Updated 5 years ago
- ☆28Updated last month
- Machine Learning model for molecular micro-pKa prediction☆41Updated 8 months ago
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆50Updated 2 months ago
- Repository for the 2024 OpenFE industry benchmark efforts☆22Updated this week
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆39Updated this week
- ☆54Updated 2 years ago