tiwarylab / aminoView external linksLinks
Automatic Mutual Information Noise Omission
☆15Oct 8, 2024Updated last year
Alternatives and similar repositories for amino
Users that are interested in amino are comparing it to the libraries listed below
Sorting:
- Spectral Gap Optimization of Parameters☆18Mar 28, 2020Updated 5 years ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆45May 3, 2020Updated 5 years ago
- Scripts for PCA and related analyses of lipid motions☆10Jun 21, 2022Updated 3 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago
- ☆11Oct 18, 2019Updated 6 years ago
- Learning Molecular Dynamics with Simple Language Model built upon Long Short-Term Memory Neural Network☆44Jun 23, 2022Updated 3 years ago
- Using supervised machine learning to build collective variables for accelerated sampling☆28Jun 26, 2018Updated 7 years ago
- Instructions for Building Software on Various Platforms☆17May 12, 2025Updated 9 months ago
- Computational Statistical Mechanics Tutorials☆15Nov 29, 2012Updated 13 years ago
- A bare metal Python library for building and manipulating protein molecular structures☆17Feb 14, 2025Updated last year
- Program for robust fitting of bonded Molecular Mechanics parameters☆15Jun 30, 2015Updated 10 years ago
- A deep learning-based framework to uniquely identify an uncorrelated, isometric and meaningful latent representation.☆18Sep 12, 2023Updated 2 years ago
- asyncmd is a library to write concurrent code to run and analyze molecular dynamics simulations using pythons async/await syntax. Computa…☆20Dec 15, 2025Updated 2 months ago
- aimmd (AI for Molecular Mechanism Discovery) autonomously steers (a large number of) molecular dynamics simulations to efficiently sample…☆19Nov 22, 2025Updated 2 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Feb 11, 2021Updated 5 years ago
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Sep 20, 2021Updated 4 years ago
- C++ Accelerated Python Diffusion Maps Library☆23Aug 28, 2018Updated 7 years ago
- Fast PBC wrapping and unwrapping for VMD☆24Nov 25, 2024Updated last year
- ☆25Jan 20, 2022Updated 4 years ago
- MemSurfer is a software tool to compute bilayer membrane surfaces.☆27May 23, 2024Updated last year
- ☆25Feb 28, 2023Updated 2 years ago
- ☆29May 31, 2023Updated 2 years ago
- An efficient, multithreaded weighted histogram analysis (WHAM) implementation for the post-processing of umbrella MD simulations.☆28Apr 1, 2024Updated last year
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Aug 10, 2025Updated 6 months ago
- python library for dimensionality reduction☆32Oct 28, 2025Updated 3 months ago
- LOOS: a lightweight object-oriented structure analysis library☆127Oct 20, 2025Updated 3 months ago
- ☆36May 31, 2021Updated 4 years ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆35Dec 10, 2025Updated 2 months ago
- ☆32Feb 24, 2022Updated 3 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆75Jun 12, 2023Updated 2 years ago
- An application for configuring and running simulations with OpenMM☆76Oct 30, 2025Updated 3 months ago
- Adaptive string method implementation in AmberTools23 and Amber22☆14Jan 7, 2025Updated last year
- VMD Plugin and associated scripts to build lignin structures from topological specifications☆17Jul 17, 2025Updated 6 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆40Aug 11, 2023Updated 2 years ago
- Home of the public Martini 3 lipid parameters☆18Sep 29, 2025Updated 4 months ago
- A client interface to the QCArchive Project (read-only image of QCFractal)☆34Sep 13, 2023Updated 2 years ago
- Enhanced sampling methods for molecular dynamics simulations☆42Dec 16, 2022Updated 3 years ago
- Statistical models for biomolecular dynamics☆42May 8, 2025Updated 9 months ago
- How to start with Jupyter, Python, Libs, Github and Models☆13May 18, 2022Updated 3 years ago