msmbuilder / msmbuilder2022Links
Statistical models for biomolecular dynamics
☆38Updated 3 months ago
Alternatives and similar repositories for msmbuilder2022
Users that are interested in msmbuilder2022 are comparing it to the libraries listed below
Sorting:
- ☆68Updated last year
- Force Fields☆64Updated 6 months ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆83Updated last month
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- ☆33Updated 10 months ago
- Simple protein-ligand complex simulation with OpenMM☆86Updated last year
- A python module to plot secondary structure schemes☆25Updated last year
- The public versio☆61Updated 2 years ago
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆50Updated 2 months ago
- ☆67Updated 2 years ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆71Updated 7 months ago
- Workflow to clean up and fix structural problems in protein-ligand binding datasets☆51Updated 3 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆57Updated last week
- Random Acceleration Molecular Dynamics in GROMACS☆39Updated last year
- ☆38Updated 11 months ago
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆42Updated last month
- Analysis of non-covalent interactions in MD trajectories☆60Updated 7 months ago
- ☆56Updated 2 years ago
- FEP-SPell-ABFE: An Open Source Alchemical Absolute Binding Free Energy Calculation Workflow for Drug Discovery☆70Updated 7 months ago
- ☆28Updated last year
- ☆39Updated last year
- ☆44Updated 3 years ago
- Fully automated high-throughput MD pipeline☆67Updated this week
- Convert coarse-grained protein structure to all-atom model☆41Updated 2 months ago
- FreeSASA Python Module☆56Updated 2 weeks ago
- Trusted force field files for gromacs☆57Updated 9 months ago
- Molecular Library Toolbox☆59Updated 3 weeks ago
- Analysis framework of dissipation-corrected targeted molecular dynamics (dcTMD) simulations.☆15Updated 3 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated 2 years ago