msmbuilder / msmbuilder2022Links
Statistical models for biomolecular dynamics
☆40Updated 7 months ago
Alternatives and similar repositories for msmbuilder2022
Users that are interested in msmbuilder2022 are comparing it to the libraries listed below
Sorting:
- ☆69Updated last year
- Force Fields☆66Updated 11 months ago
- ☆34Updated last year
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆89Updated 5 months ago
- The public versio☆75Updated 2 years ago
- Simple protein-ligand complex simulation with OpenMM☆91Updated 2 years ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆72Updated last week
- Convert coarse-grained protein structure to all-atom model☆47Updated 6 months ago
- ☆68Updated 2 years ago
- ☆59Updated 3 weeks ago
- Fully automated high-throughput MD pipeline☆86Updated this week
- Adds or removes hydrogen atoms to achieve the appropriate molecular protonation state for a user-specified pH range☆51Updated 2 weeks ago
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆52Updated 7 months ago
- binding free energy estimator 2☆135Updated 3 weeks ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆82Updated 2 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆42Updated last year
- The official repository of Uni-pKa☆89Updated 8 months ago
- A python module to plot secondary structure schemes☆25Updated 2 years ago
- Workflow to clean up and fix structural problems in protein-ligand binding datasets☆63Updated last month
- Thompson Sampling☆78Updated 7 months ago
- Analysis of non-covalent interactions in MD trajectories☆66Updated 11 months ago
- A python toolkit for analysing membrane protein-lipid interactions.☆68Updated 2 months ago
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆70Updated 2 years ago
- FEP-SPell-ABFE: An Open Source Alchemical Absolute Binding Free Energy Calculation Workflow for Drug Discovery☆78Updated 11 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆59Updated last month
- Kinase-focused fragment library☆67Updated last month
- ☆91Updated last year
- Accurate prediction of protein pKa with representation learning☆46Updated 10 months ago