choderalab / torsionfitLinks
Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.
☆21Updated 4 years ago
Alternatives and similar repositories for torsionfit
Users that are interested in torsionfit are comparing it to the libraries listed below
Sorting:
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆30Updated last year
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆44Updated 4 years ago
- OpenMM plugin to interface with PLUMED☆70Updated last week
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- Dihedral scanner with wavefront propagation☆34Updated 6 months ago
- An open source Python framework for transition interface and path sampling calculations.☆114Updated 5 months ago
- Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling☆34Updated this week
- Rigid Body Dynamics with OpenMM☆12Updated 7 years ago
- An example of how to write a plugin for OpenMM☆31Updated last year
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆103Updated last year
- OpenMM plugin to define forces with neural networks☆32Updated 5 years ago
- Main code repository for FATSLiM☆23Updated 3 years ago
- Package for consistent reporting of relative free energy results☆40Updated this week
- Physical validation of molecular simulations☆57Updated last month
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆45Updated last year
- A stripped-down set of just antechamber, sqm, and tleap.☆33Updated 4 years ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated last week
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 2 years ago
- Automatic Mutual Information Noise Omission☆15Updated last year
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆34Updated 4 months ago
- Spectral Gap Optimization of Parameters☆18Updated 5 years ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- How to analyze molecular dynamics data with PyEMMA☆80Updated 6 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Fast PBC wrapping and unwrapping for VMD☆23Updated 11 months ago
- A physical property evaluation toolkit from the Open Forcefield Consortium.☆56Updated last week
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆61Updated last year
- Using supervised machine learning to build collective variables for accelerated sampling☆28Updated 7 years ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆79Updated last week