jvermaas / LigninBuilderLinks
VMD Plugin and associated scripts to build lignin structures from topological specifications
☆15Updated 2 months ago
Alternatives and similar repositories for LigninBuilder
Users that are interested in LigninBuilder are comparing it to the libraries listed below
Sorting:
- Python wrapper for packmol molecule packing program☆12Updated 9 years ago
- ☆61Updated 2 months ago
- A set of tutorials to introduce new users to mBuild☆11Updated 4 years ago
- GROMACS implementation of TraPPE-UA force field with HH-Alkane modifications☆13Updated 2 years ago
- A set of tutorials to introduce new users to the MoSDeF (Molecular Simulation Design Framework) toolkit☆26Updated last year
- Computing Diffusion Coefficients in Macromolecular Simulations: The Diffusion Coefficient Tool for VMD☆34Updated 2 years ago
- an interface to semi-empirical quantum chemistry methods implemented with pytorch☆53Updated last week
- Analyse Rotational Diffusion Tensor from MD Simulations☆21Updated 10 months ago
- a unified interface for molecular harmonic vibrational frequency calculations☆31Updated last month
- Automated workflow for generating quantum chemistry calculation of explicitly solvated molecules☆54Updated 2 weeks ago
- A wrapper to run xtb inside Gaussian.☆23Updated 5 years ago
- ☆28Updated 3 years ago
- Code for enumerating and evaluating numerical methods for Langevin dynamics using near-equilibrium estimates of the KL-divergence. Accomp…☆13Updated 7 years ago
- Using supervised machine learning to build collective variables for accelerated sampling☆28Updated 7 years ago
- A force field for the simulation of inorganic-organic interfaces (INTERFACE-CHARMM, INTERFACE-PCFF)☆15Updated last year
- Interactive Jupyter Notebooks for learning the fundamentals of Density-Functional Theory (DFT)☆75Updated 3 months ago
- Genetic Algorithm (GA) program for optimizing the parameters of a polarizable force field based on the AMOEBA functional form☆12Updated 7 years ago
- This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles☆43Updated last month
- A comprehensive tool for analyzing liquid solvation structure.☆54Updated last month
- A Python code to quickly derive ab initio parameterized force fields.☆44Updated last year
- Quick Reaction Coordinate using Python☆39Updated last year
- Nudged-Elastic Band implementation in python☆25Updated 8 years ago
- A Benchmark Implementation of COSMO-SAC☆67Updated 3 months ago
- This library tackles the construction and efficient execution of computational chemistry workflows☆49Updated last year
- code for single-ended and double-ended molecular GSM☆63Updated last month
- ☆15Updated 3 years ago
- A python utility to convert between XYZ and Z-matrix geometries.☆42Updated 3 years ago
- OpenMM plugin for simulating electrochemical systems☆21Updated 11 months ago
- std2 program for computing excited states and response functions via simplified TD-DFT methods (sTDA, sTD-DFT, SF-sTD-DFT, XsTDA, XsTD-DF…☆43Updated 6 months ago
- helPME: an efficient library for particle mesh Ewald☆29Updated 3 years ago