fhh2626 / ABF-example-files-for-NAMD-and-OpenMMLinks
☆10Updated 6 years ago
Alternatives and similar repositories for ABF-example-files-for-NAMD-and-OpenMM
Users that are interested in ABF-example-files-for-NAMD-and-OpenMM are comparing it to the libraries listed below
Sorting:
- Repository of the data for PLUMED Masterclass 22.3☆14Updated last year
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- Rethinking Metadynamics: From Bias Potentials to Probability Distributions☆13Updated 2 years ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- ☆42Updated 2 months ago
- NAMD-xtb-QMMM-interface☆11Updated 5 years ago
- Set of tools for input preparation for conserved water search from MD trajectories (gromacs, amber) and their analysis☆18Updated 2 months ago
- Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible☆26Updated 4 months ago
- ☆13Updated 4 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated last week
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆22Updated 6 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆38Updated 2 years ago
- Database of hand-built OPLS-AA parameters and topologies for 464 molecules. Zip files contains parameter and topologies for OpenMM, Groma…☆35Updated 7 years ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆15Updated last month
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆23Updated last year
- scripts for analyzing molecular dynamics trajectories using VMD☆39Updated 10 years ago
- Convenience functions for VMD-TCL scripting☆14Updated 4 months ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆35Updated 2 years ago
- ☆22Updated 5 months ago
- PARENT: a parallel software suite for the calculation of configurational entropy in biomolecular systems☆16Updated 3 years ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 3 years ago
- ☆28Updated last year
- NAMD QM/MM Tutorial on Free Energy Profile of Reaction Mechanisms☆13Updated 7 years ago
- Funnel maker is a set of scripts that sets up funnel metadynamics simulations for protein-ligand binding with PLUMED and OpenMM.☆15Updated 2 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 2 years ago
- Robust Equilibration Detection☆26Updated 2 months ago
- Development of High-Throughput Polymer Network Atomistic Simulation☆25Updated last year