fhh2626 / ABF-example-files-for-NAMD-and-OpenMMLinks
☆10Updated 5 years ago
Alternatives and similar repositories for ABF-example-files-for-NAMD-and-OpenMM
Users that are interested in ABF-example-files-for-NAMD-and-OpenMM are comparing it to the libraries listed below
Sorting:
- Examples of applications of pymbar to various problems in simulation and experiment☆22Updated 10 years ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- ☆13Updated last week
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆22Updated 5 years ago
- ☆41Updated this week
- Repository of the data for PLUMED Masterclass 22.3☆14Updated last year
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 6 years ago
- Set of tools for input preparation for conserved water search from MD trajectories (gromacs, amber) and their analysis☆17Updated last week
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- Graph-Based Force Fields Model to parameterize Force Fields by Graph Attention Networks☆9Updated last year
- PARENT: a parallel software suite for the calculation of configurational entropy in biomolecular systems☆15Updated 3 years ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆14Updated 2 months ago
- Different run and analysis scripts as described in the research guides.☆13Updated 3 years ago
- NAMD-xtb-QMMM-interface☆11Updated 4 years ago
- ☆22Updated 3 weeks ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- ☆27Updated last year
- Rethinking Metadynamics: From Bias Potentials to Probability Distributions☆12Updated last year
- A tutorials suite for BioSimSpace.☆25Updated 2 months ago
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- Funnel maker is a set of scripts that sets up funnel metadynamics simulations for protein-ligand binding with PLUMED and OpenMM.☆14Updated last year
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 5 years ago
- Convenience functions for VMD-TCL scripting☆14Updated 6 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated 2 weeks ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 2 years ago
- ☆29Updated last month
- Density based object completion over PBC.☆30Updated 7 months ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆32Updated last year
- Accelerating Metadynamics-Based Free-Energy Calculations with Adaptive Machine Learning Potentials☆15Updated 4 years ago