tiwarylab / SGOOPLinks
Spectral Gap Optimization of Parameters
☆18Updated 5 years ago
Alternatives and similar repositories for SGOOP
Users that are interested in SGOOP are comparing it to the libraries listed below
Sorting:
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 10 months ago
- Automatic Mutual Information Noise Omission☆15Updated 9 months ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 5 years ago
- OpenMM plugin to interface with PLUMED☆67Updated 4 months ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆43Updated 5 years ago
- Python library for adaptive QM/MM methods☆28Updated 5 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆71Updated 2 years ago
- Examples of applications of pymbar to various problems in simulation and experiment☆22Updated 10 years ago
- ASH is a Python-based computational chemistry and QM/MM environment, primarily for molecular calculations in the gas phase, explicit sol…☆73Updated this week
- Collective variables by artificial neural networks☆9Updated 3 years ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated this week
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 6 years ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- MLP training for molecular systems☆49Updated last week
- OpenMM plugin to define forces with neural networks☆33Updated 5 years ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 2 years ago
- ☆41Updated this week
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆99Updated last year
- Bayesian Multistate Bennett Acceptance Ratio Method☆14Updated 2 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- Fast PBC wrapping and unwrapping for VMD☆23Updated 7 months ago
- learning coarse-grained force fields☆62Updated 3 years ago
- Accelerated sampling framework with autoencoder-based method☆23Updated 5 years ago
- Robust Equilibration Detection☆22Updated 2 months ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆29Updated 10 months ago