tiwarylab / SGOOPLinks
Spectral Gap Optimization of Parameters
☆18Updated 5 years ago
Alternatives and similar repositories for SGOOP
Users that are interested in SGOOP are comparing it to the libraries listed below
Sorting:
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 8 months ago
- Automatic Mutual Information Noise Omission☆15Updated 7 months ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆43Updated 5 years ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 5 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆45Updated 4 years ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 2 years ago
- OpenFF NAGL☆16Updated last week
- Repository of the data for PLUMED Masterclass 22.3☆13Updated 10 months ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- Collective variables by artificial neural networks☆9Updated 3 years ago
- Examples of applications of pymbar to various problems in simulation and experiment☆21Updated 10 years ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- Set up relative free energy calculations using a common scaffold☆23Updated last month
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆42Updated 3 years ago
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆13Updated last month
- Robust Equilibration Detection☆22Updated last month
- Bayesian Multistate Bennett Acceptance Ratio Method☆13Updated 3 weeks ago
- Python library for adaptive QM/MM methods☆28Updated 5 years ago
- Physical validation of molecular simulations☆56Updated last month
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆20Updated 11 months ago
- Density based object completion over PBC.☆30Updated 5 months ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆68Updated last year
- Python code for generating Boresch restraints from MD simulations☆21Updated 2 years ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆28Updated 8 months ago
- Optimization of OpenFF parameters using ForceBalance and QCArchive☆11Updated 3 years ago
- ☆10Updated 5 years ago