tiwarylab / DynamicsAELinks
A deep learning-based framework to uniquely identify an uncorrelated, isometric and meaningful latent representation.
☆17Updated 2 years ago
Alternatives and similar repositories for DynamicsAE
Users that are interested in DynamicsAE are comparing it to the libraries listed below
Sorting:
- Geometric super-resolution for molecular geometries☆42Updated 3 years ago
- [ICML 2025] Repurposing pre-trained score-based generative models for transition path sampling by minimizing the Onsager-Machlup (OM) act…☆22Updated last week
- Source code and input files associated to the paper "Targeted free energy perturbation revisited: Accurate free energies from mapped refe…☆13Updated 4 years ago
- Code for performing adversarial attacks on atomistic systems using NN potentials☆40Updated 3 years ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆25Updated 11 months ago
- Repository for MD methods and analysis from submitted or published work☆19Updated 2 years ago
- Get access to our MD data files.☆29Updated last year
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆48Updated 3 years ago
- MDAnalysis tool to calculate membrane curvature.☆34Updated 3 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 2 years ago
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆21Updated last year
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆19Updated 6 months ago
- A Newtonian message passing network for deep learning of interatomic potentials and forces☆45Updated 5 months ago
- [ICLR'24] Symphony: Symmetry-Equivariant Point-Centered Spherical Harmonics for Molecule Generation☆28Updated 8 months ago
- Denoising diffusion probabilistic models for replica exchange☆24Updated 3 years ago
- Run OpenMM with forces provided by any Python program☆37Updated 10 months ago
- Mindless molecule generator in a Python package.☆39Updated last week
- Library for training Gaussian Processes on Molecules☆36Updated 3 years ago
- A universal ML model to predict molecular dynamics trajectories with long time steps☆23Updated 3 weeks ago
- Supplementary Data for "A graph representation of molecular ensembles for polymer property prediction"☆21Updated 3 years ago
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆35Updated 3 months ago
- Molecular Property Prediction using GP with a SOAP kernel☆21Updated 5 years ago
- Data and scripts for comprehensive benchmark of conformer relative energies☆25Updated 5 years ago
- N-Dimensional MD engine with symmetry group constraints written in C☆50Updated last year
- OpenMM plugin to interface with XTB☆18Updated 2 weeks ago
- learning coarse-grained force fields☆64Updated 3 years ago
- A python package for performing GROMACS simulation ensembles☆17Updated 3 weeks ago
- A framework for using topological data analysis to extract structure/symmetry from scientific systems.☆25Updated 3 years ago
- ☆21Updated 6 years ago