nicodjimenez / fit_neuron
A neuroscience python package for the estimation and evaluation of neural models from patch clamp neural recordings, including a library of spike distance metrics..
☆18Updated 9 years ago
Alternatives and similar repositories for fit_neuron:
Users that are interested in fit_neuron are comparing it to the libraries listed below
- Python tools for analysis of neurophysiology data☆36Updated last year
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- Tools for spike data analysis and visualization☆104Updated 2 years ago
- Recordings of 10k neurons during spontaneous behaviors☆50Updated 10 months ago
- Responses of 10,000 neurons to 2,800 natural images☆68Updated 5 years ago
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 2 months ago
- Deconvolution of calcium imaging data☆86Updated last month
- YASS: Yet Another Spike Sorter☆66Updated 2 years ago
- Functions to assess quality of spike sorting results☆32Updated last year
- A quickstart guide to tensor decomposition☆69Updated 2 years ago
- Pytorch implementation of LFADS for demo at CAN workshop☆19Updated 5 years ago
- Interpretable neural spike train models with fully-Bayesian inference algorithms☆47Updated 6 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆32Updated last year
- Problem sets and materials for systems and computational neuroscience course☆15Updated 2 weeks ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆44Updated 5 years ago
- IBL core shared libraries☆62Updated this week
- paper figure code☆24Updated last year
- Spike sorting software being developed at Flatiron Institute, based on JRCLUST (Janelia Rocket Cluster)☆28Updated 2 years ago
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆37Updated 5 years ago
- A class for using ML algorithms for spike prediction☆59Updated 7 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆38Updated 6 months ago
- Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood☆19Updated 7 years ago
- 🦀🦀🦀 Sort spikes from extra-cellular recordings using neural networks. Fully automated.☆19Updated 2 years ago
- Code accompanying Steinmetz et al., 2019☆57Updated 3 years ago
- ☆26Updated 7 months ago
- A Matlab interface for reading and writing NWB files☆50Updated this week
- Repository for collecting materials from nwb hackathons☆23Updated last week
- Preprint classes for biological journals☆30Updated 4 years ago
- Detect synchronous and overlapped spikes in extracellular recordings using Binary Pursuit (Pillow et al 2013)☆12Updated 10 years ago
- Accompanying code for Aljadeff et al., 'Analysis of Neuronal Spike Trains, Deconstructed', Neuron (2016)☆10Updated 8 years ago