Alternatives and similar repositories for pypubmed

Users that are interested in pypubmed are comparing it to the libraries listed below

• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆77Updated last year
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 8 months ago
• bm2-lab / neoFusion
  ☆13Updated 4 years ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated last year
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆51Updated 3 years ago
• WGLab / Workshop_Annotation
  Course materials for "Variants Annotate and Phenotype Analysis"
  ☆22Updated 3 years ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆119Updated last week
• YuLab-SMU / GOSemSim
  GO-terms Semantic Similarity Measures
  ☆63Updated last month
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆110Updated 9 months ago
• openbiox / bioinformatics-100-days
  Learn and practice the bioinformatics skills in 100 Days.
  ☆78Updated 5 years ago
• rli012 / GDCRNATools
  GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
  ☆66Updated last year
• Lindseynicer / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆66Updated 3 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated this week
• cancer-genomics / delfi_scripts
  ☆72Updated 4 years ago
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆60Updated 2 years ago
• inutano / pfastq-dump
  parallel-fastq-dump implementation in bash script
  ☆41Updated 5 years ago
• twbattaglia / tumor-microbiome
  A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)
  ☆13Updated last year
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆45Updated 3 months ago
• YichaoOU / HemTools
  HemTools: a collection of NGS pipelines and bioinformatic analyses
  ☆71Updated last month
• liulab-dfci / RIMA_pipeline
  ☆80Updated last year
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• biolxy / handbook-cancer-genomics
  my first book, Biological information analysis of cancer tumors
  ☆23Updated 3 years ago
• zpeng1989 / Cancer_Study
  癌症相关学习内容
  ☆50Updated 5 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆49Updated 6 years ago
• GuoBioinfoLab / CATT
  An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
  ☆21Updated last year
• BioinformaticsFMRP / PanCanStem_Web
  ☆30Updated 3 years ago
• jasonHKU0907 / proteome-phenome-atlas
  ☆55Updated 3 months ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆73Updated last year
• TrinityCTAT / Trinity_CTAT
  ☆116Updated last year