Alternatives and similar repositories for pypubmed

Users that are interested in pypubmed are comparing it to the libraries listed below

• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆123Updated 2 weeks ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆112Updated last year
• vagarwal87 / TargetScanTools
  A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org
  ☆43Updated 6 years ago
• jasonHKU0907 / proteome-phenome-atlas
  ☆67Updated 7 months ago
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆107Updated last week
• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆41Updated last year
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆80Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆65Updated last year
• DC-Jade / bioinfo_pi_atlas
  ☆53Updated 2 years ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• Lindseynicer / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆71Updated 3 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated this week
• izhangcd / DeepHF
  Core code for the DeepHF prediction tool
  ☆39Updated 6 years ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆22Updated 3 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆202Updated last year
• biolxy / handbook-cancer-genomics
  my first book, Biological information analysis of cancer tumors
  ☆26Updated 3 years ago
• zpeng1989 / Cancer_Study
  癌症相关学习内容
  ☆50Updated 6 years ago
• genepattern / genepattern-server
  The GenePattern Server web application
  ☆36Updated 2 months ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 8 months ago
• openbiox / bioinformatics-100-days
  Learn and practice the bioinformatics skills in 100 Days.
  ☆79Updated 6 years ago
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆71Updated last week
• miaozhun / DEsingle
  Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.
  ☆31Updated 2 years ago
• openbiox / UCSCXenaShiny
  📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…
  ☆104Updated last month
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated last month
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆75Updated last year
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆112Updated last year
• tidymass / tidymass
  tidymass
  ☆58Updated 2 weeks ago
• WWXkenmo / Bioinfor_researchers_atlas
  ☆47Updated 3 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆150Updated last year