☆139Aug 9, 2016Updated 9 years ago
Alternatives and similar repositories for py3dmol
Users that are interested in py3dmol are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 2D and 3D molecular visualization in Jupyter notebooks using 3DMol.js and D3.js☆85Mar 30, 2018Updated 8 years ago
- Jupyter widget to interactively view molecular structures and trajectories☆918Feb 2, 2026Updated 2 months ago
- RDKit Tools for the IPython Notebook☆46Oct 16, 2018Updated 7 years ago
- Python interface of cpptraj☆190Mar 6, 2026Updated last month
- Notebook-integrated tools for molecular simulation and visualization☆172Apr 2, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- JupyterLab extension for py3Dmol☆22Jan 2, 2022Updated 4 years ago
- WebGL accelerated JavaScript molecular graphics library☆963Mar 29, 2026Updated 2 weeks ago
- Control PyMOL sessions via IPython☆61Nov 3, 2022Updated 3 years ago
- Demos of many Rosetta applications☆24Jun 10, 2025Updated 10 months ago
- An interactive tool for supporting the lifecycle of a computational molecular chemistry investigation☆26Aug 16, 2022Updated 3 years ago
- A high performance drop-in replacement for Biotite's PDBFile.☆42May 27, 2025Updated 10 months ago
- Code associated with "A Deep-Learning View of Chemical Space Designed to Facilitate Drug Discovery"☆23Feb 1, 2022Updated 4 years ago
- ☆32Feb 24, 2022Updated 4 years ago
- 2D molecule visualization component☆22Nov 2, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- See http://dx.doi.org/10.1039/C7SC04156J for more details☆11Aug 28, 2023Updated 2 years ago
- pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of str…☆28Aug 20, 2020Updated 5 years ago
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆328Oct 6, 2025Updated 6 months ago
- PDBFixer fixes problems in PDB files☆637Mar 10, 2026Updated last month
- Data visualizations for biomolecular dynamics☆17Oct 30, 2018Updated 7 years ago
- Advanced tutorials for WESTPA 2.0☆16Feb 27, 2026Updated last month
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆101Jun 9, 2025Updated 10 months ago
- A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files☆180Oct 10, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- RDKit code for the JCIM article☆17Aug 17, 2013Updated 12 years ago
- Interaction Fingerprints for protein-ligand complexes and more☆488Mar 30, 2026Updated 2 weeks ago
- C-library for calculating Solvent Accessible Surface Areas☆183Nov 15, 2025Updated 4 months ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆112Jul 20, 2023Updated 2 years ago
- Weighted Ensemble Data Analysis and Plotting☆27Dec 11, 2025Updated 4 months ago
- Get access to our MD data files.☆31Nov 22, 2023Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆52May 15, 2025Updated 10 months ago
- 👑 A lightweight molecular dynamics pipeline for running protein simulations on portable hardware☆36Mar 23, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is a generic C++ library that can be used to rapidly align two small molecules in 3D space, with shape - and optionally color - Tani…☆15Sep 3, 2025Updated 7 months ago
- A collection of frequency scale factors from various sources.☆15Mar 15, 2023Updated 3 years ago
- Open-source foundation of the user-sponsored PyMOL molecular visualization system.☆1,641Mar 25, 2026Updated 2 weeks ago
- Membrane protein builder and parameterizer☆19Sep 1, 2024Updated last year
- Generate images of molecules and their properties for use in presentations and reports☆44Jul 21, 2022Updated 3 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆67Apr 16, 2021Updated 4 years ago
- ☆17Apr 10, 2024Updated 2 years ago