Alternatives and similar repositories for py-mmcif

Users that are interested in py-mmcif are comparing it to the libraries listed below

• PDBeurope / pdbecif
  A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"
  ☆37Updated last year
• pstansfeld / MemProtMD
  ☆40Updated 3 weeks ago
• bowman-lab / enspara
  Modeling molecular ensembles with scalable data structures and parallel computing
  ☆35Updated last week
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆95Updated 9 months ago
• Psivant / femto
  A comprehensive toolkit for predicting free energies
  ☆53Updated 4 months ago
• jgreener64 / mmterm
  View proteins and trajectories in the terminal
  ☆108Updated 4 years ago
• KULL-Centre / CALVADOS
  ☆64Updated this week
• maccallumlab / meld
  Modeling with limited data
  ☆57Updated 6 months ago
• freesasa / freesasa-python
  FreeSASA Python Module
  ☆54Updated last year
• samirelanduk / atomium
  Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
  ☆105Updated last year
• MobleyLab / benchmarksets
  Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards
  ☆42Updated 3 years ago
• speleo3 / pymol-psico
  Pymol ScrIpt COllection (PSICO)
  ☆59Updated 10 months ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆63Updated 2 months ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆85Updated 4 years ago
• michellab / BioSimSpace
  Code and resources for the EPSRC BioSimSpace project.
  ☆79Updated 6 months ago
• alchemistry / alchemical-best-practices
  Best practice document for alchemical free energy calculations going to livecoms journal
  ☆73Updated this week
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆69Updated 6 months ago
• osmart / hole2
  Source code for HOLE program.
  ☆35Updated 9 months ago
• maccallumlab / martini_openmm
  ☆54Updated 2 years ago
• jchodera / statmech-for-biochemists
  A primer on statistical mechanics for biochemists
  ☆46Updated 2 years ago
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆42Updated last year
• AstraZeneca / jazzy
  Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.
  ☆84Updated 4 months ago
• whitead / molcloud
  Make a bunch of molecules
  ☆96Updated 6 months ago
• MiaoLab20 / gamd-openmm
  Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…
  ☆81Updated last month
• molstar / BinaryCIF
  BinaryCIF is a data format for storing text based CIF files using a more efficient binary encoding.
  ☆24Updated 7 months ago
• mms-fcul / PypKa
  A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism
  ☆60Updated last year
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆71Updated 9 months ago
• bioexcel / biobb
  Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…
  ☆58Updated 2 months ago
• duerrsimon / substrate-scope-plot
  ☆55Updated 2 weeks ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆102Updated 8 months ago