KumarLabJax / MouseTrackingLinks
Neural network tracking code applied to single mice in open fields assays.
☆10Updated 6 years ago
Alternatives and similar repositories for MouseTracking
Users that are interested in MouseTracking are comparing it to the libraries listed below
Sorting:
- ☆52Updated last year
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- cell detection in calcium imaging recordings☆427Updated 5 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆35Updated 5 years ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 3 months ago
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆19Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆39Updated 3 months ago
- Histology processing☆72Updated last month
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated last week
- Python code for interacting with the Open Ephys GUI☆42Updated 3 months ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Registration of cells across sessions.☆76Updated last year
- Large field-of-view miniature microscope for rats and larger animals.☆17Updated 2 years ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆348Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆199Updated last year
- ☆32Updated 6 years ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- ☆119Updated 5 months ago
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆49Updated 3 weeks ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆53Updated 8 months ago
- Various scripts to support deeplabcut and what to do afterwards!☆161Updated 7 months ago
- Quantify user-defined behaviors.☆103Updated 2 weeks ago
- SpikeForest -- spike sorting analysis for website -- version 2☆35Updated 3 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆81Updated 9 months ago