KumarLabJax / MouseTrackingLinks
Neural network tracking code applied to single mice in open fields assays.
☆10Updated 6 years ago
Alternatives and similar repositories for MouseTracking
Users that are interested in MouseTracking are comparing it to the libraries listed below
Sorting:
- cell detection in calcium imaging recordings☆427Updated 5 months ago
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated last week
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆49Updated 3 weeks ago
- Registration of cells across sessions.☆76Updated last year
- ☆18Updated 2 years ago
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆205Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆348Updated this week
- Various scripts to support deeplabcut and what to do afterwards!☆160Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆198Updated last year
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆75Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Quantify user-defined behaviors.☆103Updated 2 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- Automated 3D cell detection in very large images☆223Updated this week
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆19Updated last month
- ☆52Updated last year
- ☆103Updated 3 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated last year
- Fiber photometry analysis☆23Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆39Updated last month
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- Histology processing☆72Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago