KumarLabJax / MouseTrackingLinks
Neural network tracking code applied to single mice in open fields assays.
☆10Updated 6 years ago
Alternatives and similar repositories for MouseTracking
Users that are interested in MouseTracking are comparing it to the libraries listed below
Sorting:
- ☆9Updated 2 months ago
- Free, platform independent, behavior tracking software.☆143Updated 5 months ago
- Various scripts to support deeplabcut and what to do afterwards!☆156Updated 5 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆197Updated last year
- cell detection in calcium imaging recordings☆417Updated 3 months ago
- Registration of cells across sessions.☆75Updated last year
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 10 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated 2 months ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 4 months ago
- ☆52Updated last year
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆19Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 3 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 7 months ago
- a module for kinematic analysis of deeplabcut outputs☆146Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Histology processing☆71Updated 3 months ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆81Updated last week
- Fiber photometry analysis☆22Updated last week
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆73Updated 2 years ago
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆51Updated last week
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- Python code for interacting with the Open Ephys GUI☆42Updated last month
- Tutorials for using SpikeInterface on extracellular datasets.☆68Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆29Updated last week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago