Alternatives and similar repositories for centerline_CE

Users that are interested in centerline_CE are comparing it to the libraries listed below

• barry664 / DeformCL

  View on GitHub
  ☆34Jun 10, 2025Updated 8 months ago
• reckdk / SkelCompletion-3D

  View on GitHub
  This is an official implementation of the MICCAI2024 paper "Self-supervised 3D Skeleton Completion for Vascular Structures".
  ☆18Jun 10, 2025Updated 8 months ago
• CoWBenchmark / TopCoW_Eval_Metrics

  View on GitHub
  Package to compute the evaluation metrics for MICCAI TopCoW2024 challenge
  ☆16Sep 24, 2024Updated last year
• 5k5000 / DeepClosing

  View on GitHub
  The code of our paper 'Deep Closing: Enhancing Topological Connectivity in Medical Tubular Segmentation'
  ☆19May 21, 2024Updated last year
• MedICL-VU / Vector-Field-Transformer

  View on GitHub
  VFT is a domain generalization model for retinal vessel segmentation that trained on fundus image and test on OCT-A
  ☆23Dec 15, 2022Updated 3 years ago
• ivan-pua / automatic-labeling-heart-vessels

  View on GitHub
  Research Paper - Automated Labelling of Coronary Vessels via Neural Network
  ☆10Oct 12, 2020Updated 5 years ago
• wenqihuang / NIK_MRI

  View on GitHub
  Repository for neural implicit k-space project
  ☆15Aug 18, 2023Updated 2 years ago
• WeiliJiang / Ori_Net

  View on GitHub
  Data preprocessing for CCTA
  ☆14May 29, 2025Updated 8 months ago
• pedr0sorio / lefusion-slicer

  View on GitHub
  3DSlicer plugin for inpainting lung nodules in 3D chest CT data.
  ☆11Dec 2, 2024Updated last year
• jiongzhang-john / DSCA

  View on GitHub
  DSCA: A Digital Subtraction Angiography Sequence Dataset and Spatio-Temporal Model for Cerebral Artery Segmentation
  ☆19Jun 17, 2025Updated 7 months ago
• PengchengShi1220 / NexToU

  View on GitHub
  NexToU: Efficient Topology-Aware U-Net for Medical Image Segmentation
  ☆81Nov 19, 2025Updated 2 months ago
• chinmay5 / vesselformer

  View on GitHub
  ☆14Jul 8, 2023Updated 2 years ago
• SPIresearch / EviPrompt

  View on GitHub
  ☆14Nov 13, 2024Updated last year
• martinmenten / skeletonization-for-gradient-based-optimization

  View on GitHub
  ☆57Jan 2, 2024Updated 2 years ago
• MIC-DKFZ / Skeleton-Recall

  View on GitHub
  Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
  ☆130Dec 8, 2025Updated 2 months ago
• NataliiaMolch / uq-mia-cookbook

  View on GitHub
  ☆17Nov 3, 2025Updated 3 months ago
• iMED-Lab / COSTA

  View on GitHub
  COSTA: A Multi-center Multi-vendor TOF-MRA Dataset and A Novel Cerebrovascular Segmentation Network
  ☆42Dec 17, 2025Updated last month
• YH-Qiu / CorSegRec

  View on GitHub
  For MICCAI 2023
  ☆18Jul 21, 2023Updated 2 years ago
• balinthomonnay / coronary_cta_prediciton

  View on GitHub
  ☆17May 9, 2022Updated 3 years ago
• raidionics / LyNoS

  View on GitHub
  A multilabel lymph node segmentation dataset from contrast CT
  ☆26Jul 29, 2025Updated 6 months ago
• mirthAI / CSA-Net

  View on GitHub
  ☆43Nov 7, 2024Updated last year
• ImranNust / AortaSeg24

  View on GitHub
  This repository contains codes for AortaSeg24 Grand-Challenge.
  ☆19Nov 22, 2024Updated last year
• Ariel97-star / FFNet-CoronaryArtery-Segmentation

  View on GitHub
  The paper is under review, and the complete code will be public when the paper is accepted.
  ☆14Sep 12, 2021Updated 4 years ago
• PengchengShi1220 / cbDice

  View on GitHub
  [MICCAI 2024] Centerline Boundary Dice Loss for Vascular Segmentation
  ☆83Dec 9, 2025Updated 2 months ago
• mmmmimic / Topo-Loss

  View on GitHub
  Reimplementation of "A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology".
  ☆20Jul 7, 2022Updated 3 years ago
• AIM-Harvard / TotalSegmentator-to-nnUNet-format-convert

  View on GitHub
  Convert the TotalSegmentator dataset into the nnUNet format
  ☆19Aug 1, 2023Updated 2 years ago
• AIM-Harvard / DINOv2-3D-Med

  View on GitHub
  This repository provides a 3D implementation of DINOv2 for self-supervised pretraining on volumetric (3D) medical images using Lightly, M…
  ☆48Feb 6, 2026Updated last week
• Puzzled-Hui / Connectivity-Aware-Airway-Segmentation

  View on GitHub
  [IEEE JBHI, 2023] Towards Connectivity-Aware Pulmonary Airway Segmentation
  ☆19Jan 20, 2026Updated 3 weeks ago
• dvisionlab / Scyther

  View on GitHub
  Curvilinear multiplanar reformat for Dicom Images, powered by VTK with python binding.
  ☆17Mar 10, 2020Updated 5 years ago
• XiaoweiXu / ImageCAS-A-Large-Scale-Dataset-and-Benchmark-for-Coronary-Artery-Segmentation-based-on-CT

  View on GitHub
  ☆87Nov 2, 2023Updated 2 years ago
• EndoluminalSurgicalVision-IMR / ATM-22-Related-Work

  View on GitHub
  [MedIA 2023/MICCAI 2022 Grand Challenge]: Airway Tree Modeling (ATM'22) Related Work Collections, also includes the state-of-the-art work…
  ☆162Jan 15, 2026Updated last month
• PierreRouge / Cascaded-U-Net-for-vessel-segmentation

  View on GitHub
  Code associated with the paper Cascaded Multitask U-Net using topological loss for vessel segmentation and centerline extraction
  ☆25Jul 22, 2024Updated last year
• nstucki / Betti-Matching-3D

  View on GitHub
  ☆28Sep 9, 2024Updated last year
• ZhangZ7112 / PVA-CAS

  View on GitHub
  The source code of "Partial Vessels Annotation-based Coronary Artery Segmentation with Self-training and Prototype Learning".
  ☆22Jan 26, 2024Updated 2 years ago
• TaWald / nnUNet

  View on GitHub
  ☆43Jan 31, 2026Updated 2 weeks ago
• halleewong / MultiverSeg

  View on GitHub
  [ICCV 2025] MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance
  ☆49Sep 24, 2025Updated 4 months ago
• iMED-Lab / CS-Net

  View on GitHub
  CS-Net (MICCAI 2019) and CS2-Net (MedIA 2020)
  ☆107Aug 13, 2025Updated 6 months ago
• GSTT-CSC / TotalSegmentator-AIDE

  View on GitHub
  TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.
  ☆32Feb 13, 2024Updated 2 years ago
• jocpae / clDice

  View on GitHub
  ☆264Feb 14, 2024Updated 2 years ago