Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
☆12Oct 26, 2019Updated 6 years ago
Alternatives and similar repositories for Suffix-Arrays
Users that are interested in Suffix-Arrays are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- huffman: An ANSI C implementation of Huffman coding☆16Apr 15, 2026Updated 5 months ago
- bwt: An ANSI C implementation of the Burrows-Wheeler transformation (BWT)☆18Apr 13, 2026Updated 5 months ago
- A flexible implementation of enhanced suffix arrays in template based C++. Supports single and multi-position wildcard. Fast queries than…☆21Oct 1, 2020Updated 5 years ago
- Tools for Map Matching using Python☆10Nov 16, 2020Updated 5 years ago
- C++ implementation of FM Index data structure wrapped in Python☆15Mar 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An open source stream generator which generates reproducible and deterministic out-of-order streams, simulating arbitrary fractions of ou…☆12May 14, 2019Updated 7 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- C++ Library implementing Compressed String Dictionaries☆47Apr 25, 2022Updated 4 years ago
- CLI utilty to work out proper constants for vpternlogic instruction☆13Jan 22, 2023Updated 3 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆113Jan 22, 2015Updated 11 years ago
- 🌳 A compressed rank/select dictionary exploiting approximate linearity and repetitiveness.☆15Jun 28, 2022Updated 4 years ago
- ☆10Feb 23, 2024Updated 2 years ago
- Parallel approach on distance based outlier detection on streaming data☆10Jan 12, 2020Updated 6 years ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆17Jun 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Sep 17, 2016Updated 10 years ago
- The ScaleOut Time Windowing Library for Java provides a set of windowing functions for time-ordered lists of events.☆22Updated this week
- This repo is deprecated, Please refer to https://github.com/glink-incubator/glink☆17Sep 29, 2023Updated 2 years ago
- Flink dynamic CEP demo☆20Mar 22, 2022Updated 4 years ago
- External memory suffix array construction using inducing☆12Jul 27, 2020Updated 6 years ago
- My research work on developing scalable techniques for trajectory outlier detection☆15Nov 19, 2020Updated 5 years ago
- An experiment to inject a customized parser using SparkSessionExtension☆16Jan 1, 2018Updated 8 years ago
- C++ Implementation of Zip Trees☆14Nov 5, 2022Updated 3 years ago
- Space-Efficient, High-Performance Rank & Select Structures on Uncompressed Bit Sequences☆15Aug 7, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Trajectory Inference☆15Sep 2, 2019Updated 7 years ago
- Java implementation of Thompson Construction Algorithm for converting regular expressions into non-deterministic finite automata (NFAs)☆19Oct 10, 2016Updated 9 years ago
- SIGIR 2017 Candidate Selection Tutorial (http://sigir.org/sigir2017/program/tutorials/#candidate)☆14Aug 6, 2017Updated 9 years ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Sep 27, 2017Updated 8 years ago
- Ontop Framework☆21Jun 9, 2018Updated 8 years ago
- AVX-2 vectorised 8-bit positional popcount for Go☆23Aug 28, 2020Updated 6 years ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- ☆14Jun 28, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This program implements the following graph reordering technique: Laxman Dhulipala, Igor Kabiljo, Brian Karrer, Giuseppe Ottaviano, Serg…☆11Sep 13, 2018Updated 8 years ago
- ☆14Dec 14, 2014Updated 11 years ago
- Website for USC ISI information integration group☆16Jun 9, 2026Updated 3 months ago
- Python implementation of Hidden Markov Model, with demo of Chinese Part-of-Speech tagging☆16Jan 25, 2014Updated 12 years ago
- This project uses satellite images on Google Earth Engine to predict canopy height and estimate carbon content in the University of Malay…☆20Feb 2, 2025Updated last year
- Fedora Google PinYin