MiaoLab20 / pyreweightingLinks
☆29Updated 2 years ago
Alternatives and similar repositories for pyreweighting
Users that are interested in pyreweighting are comparing it to the libraries listed below
Sorting:
- Cryptic pocket prediction using AlphaFold 2☆24Updated 2 years ago
- Tools to build coarse grained models and perform simulations with OpenMM☆24Updated 2 years ago
- ☆70Updated last year
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆58Updated last month
- Fully automated high-throughput MD pipeline☆76Updated last month
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- ☆34Updated 11 months ago
- Analysis of non-covalent interactions in MD trajectories☆63Updated 9 months ago
- Tool to predict water molecules placement and energy in ligand binding sites☆28Updated 2 weeks ago
- Software for the prediction of DEER and PRE data from conformational ensembles.☆12Updated 4 months ago
- ☆25Updated last year
- Computational Chemistry Workflows☆55Updated 3 years ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆32Updated 3 weeks ago
- The Guest HOst Affinity Tool (GHOAT.py) is a fully automated tool for absolute binding free energy calculations on guest-host systems.☆20Updated 4 months ago
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Updated last month
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆45Updated 4 years ago
- Weighted Ensemble Data Analysis and Plotting☆24Updated 3 months ago
- ☆14Updated 9 months ago
- ☆12Updated 2 years ago
- ☆51Updated 4 months ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆84Updated 2 months ago
- Convert coarse-grained protein structure to all-atom model☆43Updated 3 months ago
- An efficient approach to RMSD-Based HDBSCAN Clustering of long Molecular Dynamics☆15Updated 3 years ago
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆51Updated 4 months ago
- Codes to use funnel-metadynamics and funnel metadynamics automated protocol☆30Updated 3 years ago
- Tutorial to build AMBER compatable protein+lipid systems☆15Updated 8 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆39Updated last year
- Implementation of Shape and Electrostatic similarity metric in deepFMPO.☆45Updated 3 years ago
- Code and notebook for our paper "Assessing interaction recovery of predicted protein-ligand poses"☆19Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆34Updated 6 months ago