MiaoLab20 / pyreweightingLinks
☆28Updated last year
Alternatives and similar repositories for pyreweighting
Users that are interested in pyreweighting are comparing it to the libraries listed below
Sorting:
- Cryptic pocket prediction using AlphaFold 2☆22Updated 2 years ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.☆29Updated this week
- Tools to build coarse grained models and perform simulations with OpenMM☆24Updated 2 years ago
- ☆31Updated 7 months ago
- ☆25Updated last year
- Tool to predict water molecules placement and energy in ligand binding sites☆28Updated this week
- Tutorial to build AMBER compatable protein+lipid systems☆15Updated 8 years ago
- Software for the prediction of DEER and PRE data from conformational ensembles.☆12Updated 3 weeks ago
- Codes to use funnel-metadynamics and funnel metadynamics automated protocol☆29Updated 3 years ago
- A tool for the analysis of pathways sampled in molecular dynamics simulations based on Self-Organizing Maps (SOM)☆10Updated 3 years ago
- Input files for GROMACS tutorials written for the Journal of Physical Chemistry B☆19Updated 10 months ago
- CosolvKit is a versatile tool for cosolvent MD preparation and analysis☆24Updated 3 weeks ago
- ☆18Updated 3 years ago
- ☆14Updated 5 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆33Updated 2 months ago
- Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods☆20Updated 5 years ago
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆44Updated 4 years ago
- ☆68Updated 11 months ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆32Updated last year
- A repository for the development of data analysis tools for replica exchange molecular dynamics (REMD) simulations☆12Updated 2 years ago
- Weighted Ensemble Data Analysis and Plotting☆24Updated 8 months ago
- Software package for FEP☆18Updated 10 months ago
- An efficient approach to RMSD-Based HDBSCAN Clustering of long Molecular Dynamics☆15Updated 2 years ago
- Fully automated high-throughput MD pipeline☆60Updated 3 weeks ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆33Updated last year
- MSMD (mixed-solvent molecular dynamics) engine and analysis tools☆19Updated 2 months ago
- ☆10Updated 5 years ago
- ☆28Updated 3 weeks ago
- Set up relative free energy calculations using a common scaffold☆23Updated last month