ljvmiranda921 / gym-latticeView external linksLinks
An HP 2D Lattice Environment with a Gym-like API for the Protein Folding Problem
☆54Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for gym-lattice
Users that are interested in gym-lattice are comparing it to the libraries listed below
Sorting:
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 7 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- Accompanying repository for Unsupervised Active Domain Randomization in Goal-Directed RL☆12Aug 4, 2020Updated 5 years ago
- A Christmas tree protein☆19Dec 27, 2024Updated last year
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆16Sep 30, 2024Updated last year
- Few-shot Bayesian Imitation Learning with Policies as Logic over Programs☆20Oct 19, 2025Updated 3 months ago
- Gradients for dynamic programming☆17Nov 10, 2023Updated 2 years ago
- Contact map alignment☆42Feb 3, 2021Updated 5 years ago
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 3 years ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24May 19, 2024Updated last year
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Implementation of the Self Paced Reinforcement Learning Experiments☆19Sep 27, 2023Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51May 15, 2025Updated 9 months ago
- An interactive visual simulator for distance-based protein folding☆24Mar 1, 2021Updated 4 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Mar 25, 2019Updated 6 years ago
- Implementation is mostly based on Sergey Levine work (http://www.eecs.berkeley.edu/~svlevine/).☆44Dec 11, 2014Updated 11 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21May 4, 2020Updated 5 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆170Feb 16, 2023Updated 3 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- SLAM using line☆27Dec 24, 2018Updated 7 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Oct 3, 2017Updated 8 years ago
- An open-source library for the analysis of protein interactions.☆33Dec 5, 2021Updated 4 years ago
- A tutorial on how to work around ‘Mutating arrays is not supported’ error while performing automatic differentiation (AD) using the Julia…☆30Dec 9, 2020Updated 5 years ago
- A high-level framework for advanced deep learning with TensorFlow☆54Oct 4, 2017Updated 8 years ago
- Implementation of (Learning Continuous Control Policies by Stochastic Value Gradients)[https://arxiv.org/abs/1510.09142]☆25Jan 15, 2022Updated 4 years ago
- Standardized data set for machine learning of protein structure☆907Nov 18, 2020Updated 5 years ago
- ☆34Oct 5, 2020Updated 5 years ago
- Baselines and memory-based scenarios for the ViZDoom simulator☆36Dec 8, 2022Updated 3 years ago
- Home of the public Martini 3 lipid parameters☆18Sep 29, 2025Updated 4 months ago
- This module includes functions that can be used to simulate mechanochemical phenomena.☆11Nov 16, 2021Updated 4 years ago
- OpenMM plugin that implements (an)isotropic polarizable point dipoles and multipoles up to octopoles.☆11Feb 7, 2025Updated last year
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code☆41Dec 11, 2025Updated 2 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆36Aug 23, 2020Updated 5 years ago
- Stochastic Gradient Langevin Dynamics for Bayesian learning☆36Nov 29, 2021Updated 4 years ago
- Gym environments modified with adversarial agents☆36Mar 21, 2017Updated 8 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 5 months ago