dhbrookes / CbAS
Code for the ICML 2019 paper 'Conditioning by adaptive sampling for robust design'
☆34Updated 3 years ago
Alternatives and similar repositories for CbAS:
Users that are interested in CbAS are comparing it to the libraries listed below
- Fitness landscape exploration sandbox for biological sequence design.☆158Updated last year
- Code for "Biological Sequence Design with GFlowNets", 2022☆72Updated last year
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆67Updated 8 months ago
- Benchmarks for Model-Based Optimization☆84Updated 9 months ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆35Updated last year
- Learning protein structure with a differentiable simulator☆27Updated 5 years ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆15Updated 3 months ago
- Bayesian Optimisation for String Spaces☆24Updated 3 years ago
- A library of discrete objectives☆17Updated last month
- Energy-based models for atomic-resolution protein conformations☆95Updated 2 years ago
- Code for our paper "Barking up the right tree: an approach to search over molecule synthesis DAGs"☆45Updated 9 months ago
- ☆27Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆103Updated 6 months ago
- Massively-Parallel Natural Extension of Reference Frame☆30Updated 2 years ago
- 🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm☆18Updated 6 years ago
- ☆56Updated 2 years ago
- Data and models (with prediction scripts) used in publications related to Apollo1060 platform☆64Updated 7 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆82Updated last year
- Database of Interacting Protein Structures (DIPS)☆96Updated last year
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆29Updated 2 years ago
- Reimplementation of the UniRep protein featurization model.☆104Updated 4 months ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated last year
- ☆35Updated 5 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆34Updated 3 years ago
- Official repository for the paper "Improving black-box optimization in VAE latent space using decoder uncertainty" (Pascal Notin, José Mi…☆31Updated last year
- HyperPCM: Robust task-conditioned modeling of drug-target interactions☆36Updated 3 months ago
- GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.☆37Updated last year
- ☆50Updated 8 months ago
- Baselines for Model-Based Optimization☆51Updated 3 years ago